Command line: [exonerate -m p2g --showtargetgff -q ../TXNRD2-human.fa -t TXNRD2-NIVO01019577.1.subseq] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000280_2.0 # Protein # Thioredoxin reductase 2 (TXNRD2) # Cow Target: NIVO01019577.1:subseq(186204,123436) Ammotragus lervia isolate NAZ scaffold5500_len738321_cov71, whole genome shotgun sequence Model: protein2genome:local Raw score: 2179 Query range: 0 -> 475 Target range: 49999 -> 74203 1 : AlaGlyArgGlnCysTyrAspLeuLeuValIleGlyGlyGlySerGlyGlyLeuAlaCys : 20 |||||||||||| ! ||||||||||||||||||||||||||||||||||||||||||||| AlaGlyArgGlnArgTyrAspLeuLeuValIleGlyGlyGlySerGlyGlyLeuAlaCys 50000 : GCAGGCCGGCAACGGTATGACCTCCTGGTGATCGGCGGTGGATCCGGCGGCCTGGCCTGC : 50057 21 : AlaLysGlu{A} >>>> Target Intron 1 >>>> {la}AlaGlnLeuGlyLys : 29 |||||||||{|} 3251 bp {||}||||||||||||||| AlaLysGlu{A}++ ++{la}AlaGlnLeuGlyLys 50058 : GCCAAGGAA{G}gt.........................ag{CT}GCCCAGCTGGGGAAG : 53335 30 : LysValAlaValLeuAspTyrValGluProSerProGln{G} >>>> Target Intr : 43 ||||||||||||||||||||||||||||||||||||!:!{|} 118 bp LysValAlaValLeuAspTyrValGluProSerProArg{G}++ 53336 : AAGGTGGCCGTGCTGGACTACGTGGAGCCTTCCCCCCGA{G}gt................ : 53380 44 : on 2 >>>> {ly}ThrArgTrpGlyLeuGlyGlyThrCysValAsnValGlyCysIle : 58 {||}||||||||||||||||||||||||||||||||||||||||||||| ++{ly}ThrArgTrpGlyLeuGlyGlyThrCysValAsnValGlyCysIle 53381 : .........ag{gc}acCAGGTGGGGCCTCGGCGGCACCTGCGTGAATGTCGGCTGCATC : 53540 59 : ProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlyMetIleArgAspAlaProHis : 78 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ProLysLysLeuMetHisGlnAlaAlaLeuLeuGlyGlyMetIleArgAspAlaProHis 53541 : CCCAAGAAGCTGATGCACCAGGCGGCGCTGCTGGGGGGCATGATCCGCGACGCCCCCCAC : 53600 79 : TyrGlyTrpGlyValAlaGlnAlaProHisSer{Tr} >>>> Target Intron 3 : 90 ||||||||| !!||||||||||||||||||..!{||} 348 bp TyrGlyTrpArgValAlaGlnAlaProHisAsp{Tr}++ 53601 : TACGGCTGGCGCGTGGCCCAGGCCCCACACGAC{TG}gt..................... : 53640 91 : >>>> {p}AlaThrLeuAlaAspAlaValGlnAsnHisValLysSerLeuAsnTrpGly : 107 {|}||||||:!!|||||||||||||||||||||||||||||||||||||||||| ++{p}AlaThrMetAlaAspAlaValGlnAsnHisValLysSerLeuAsnTrpGly 53641 : ....ag{G}GCAACAATGGCGGATGCCGTCCAGAACCACGTGAAGTCCCTGAACTGGGGC : 54035 108 : HisArgIleGlnLeuGlnAsp{Ar} >>>> Target Intron 4 >>>> {g}Lys : 116 ||||||:!!||||||||||||{||} 617 bp {|}||| HisArgValGlnLeuGlnAsp{Ar}++ ++{g}Lys 54036 : CACCGCGTCCAGCTGCAGGAC{AG}gt.........................ag{G}AAA : 54679 117 : ValLysTyrPheAsnValLysAlaSerPheValAspThrHisThrValCysGlyValSer : 136 |||||||||!!.|||||||||||||||||||||||||||||||||||||||||||||||| ValLysTyrLeuAsnValLysAlaSerPheValAspThrHisThrValCysGlyValSer 54680 : GTCAAGTATTTGAACGTCAAGGCCAGCTTTGTCGACACGCACACGGTTTGCGGTGTCTCc : 54739 137 : LysGlyGlyGluGlu >>>> Target Intron 5 >>>> ThrLeuLeuSerAlaG : 147 ||||||||||||||| 414 bp |||||||||||||||| LysGlyGlyGluGlu++ ++ThrLeuLeuSerAlaG 54740 : aaaggtggggaggaggt.........................agACTCTGCTTTCGGCCG : 55186 148 : luHisIleValIleAlaThrGlyGlyArgProArgTyrProThrHis >>>> Target : 163 ||||||||||||||||||||||||||||||||||||||||||||||| 8 luHisIleValIleAlaThrGlyGlyArgProArgTyrProThrHis++ 55187 : AGCACATTGTCATTGCCACCGGAGGTCGGCCGCGGTACCCCACGCACgt........... : 55236 164 : Intron 6 >>>> IleGluGlyAlaLeuGluTyrGlyIleThrSerAspAspLeuPh : 177 65 bp |||||||||||||||||||||||||||||||||||||||||||| ++IleGluGlyAlaLeuGluTyrGlyIleThrSerAspAspLeuPh 55237 : ..............agATCGAAGGTGCCTTGGAATACGGGATCACGAGCGATGACCTCTT : 56141 178 : eTrpLeuLysGluSerProGlyLys{Th} >>>> Target Intron 7 >>>> {r : 186 |||||||||||||||||||||||||{||} 6125 bp {| eTrpLeuLysGluSerProGlyLys{Th}++ ++{r 56142 : CTGGCTGAAGGAATCCCCTGGGAAA{AC}gt.........................ag{G : 62295 187 : }LeuValValGlyAlaSer{T} >>>> Target Intron 8 >>>> {yr}ValAl : 195 }||||||||||||||||||{|} 603 bp {||}||||| }LeuValValGlyAlaSer{T}++ ++{yr}ValAl 62296 : }TTGGTGGTCGGGGCCAGC{T}gt.........................ag{AC}GTAGC : 62923 196 : aLeuGluCysAlaGlyLeuLeuThrGlyLeuGlyLeuAspThrThrValMetIleArgSe : 215 ||||||||||||||||!!!||||||||||||||||||||||||||||||||||||||||| aLeuGluCysAlaGlyPheLeuThrGlyLeuGlyLeuAspThrThrValMetIleArgSe 62924 : CCTGGAGTGCGCGGGCTTCCTCACCGGGCTCGGCTTGGACACCACCGTCATGATACGCAG : 62983 216 : rValProLeuArgAlaPheAspGln >>>> Target Intron 9 >>>> GlnMet : 225 ||||||||||||||||||||||||| 1106 bp |||||| rValProLeuArgAlaPheAspGln++ ++GlnMet 62984 : CGTGCCCCTCCGGGCCTTCGACCAGgt.........................agCAAATG : 64119 226 : AlaSerLeuValThrGluHisMetAlaGlyHisGlyThrArgIleLeuArgGlyCysAla : 245 |||! !||||||||||||||||||||||||||||||||||||:!!||||||||||||||| AlaLeuLeuValThrGluHisMetAlaGlyHisGlyThrArgValLeuArgGlyCysAla 64120 : GCTTTGCTTGTCACCGAGCACATGGCTGGCCACGGCACCCGGGTCCTGCGGGGCTGCGCC : 64179 246 : ProGluLysValGluLysLeuProGlyGlnGlnLeuArgValThrTrpValAspLeuThr : 265 ||||||!:!||||||||||||||||||||||||||||||||||||||||||||||||.!! ProGluArgValGluLysLeuProGlyGlnGlnLeuArgValThrTrpValAspLeuAla 64180 : CCCGAGAGGGTGGAGAAGCTCCCAGGCCAGCAGCTCCGCGTCACCTGGGTGGACCTTGCC : 64239 266 : SerAspArgLysAspAlaGlyThrPheAspThrValLeuTrpAlaIle{G} >>>> Ta : 282 ||||||||||||||||||||||||||||||||||||||||||||||||{|} SerAspArgLysAspAlaGlyThrPheAspThrValLeuTrpAlaIle{G}++ 64240 : TCGGACCGGAAGGATGCGGGCACCTTTGACACCGTGCTCTGGGCCATA{G}gt....... : 64293 283 : rget Intron 10 >>>> {ly}ArgValProGluThrAlaSerLeuAsnLeuGluLy : 294 5963 bp {||}||||||||||||||||||||||||||||||||||| ++{ly}ArgValProGluThrAlaSerLeuAsnLeuGluLy 64294 : ...................ag{GC}CGAGTTCCAGAAACCGcgagtctgaatttggaaaa : 70289 295 : sAlaGlyValHisThrAsnProValThrGlyLysIleLeuValAspAlaGlnGluThrTh : 314 ||||||||||!.!||||||||||||||||||||||||!!!|||||||||||||||.!!|| sAlaGlyValArgThrAsnProValThrGlyLysIlePheValAspAlaGlnGluAlaTh 70290 : ggCTGGTGTGCGTACGAACCCCGTCACTGGGAAGATCTTCGTTGATGCCCAGGAAGCCAC : 70349 315 : rSerValProHisIleTyrAlaIleGlyAspValAlaGlu >>>> Target Intron : 328 ||||:!!||||||||||||||||||||||||||||||||| 1025 bp rSerIleProHisIleTyrAlaIleGlyAspValAlaGlu++ 70350 : CTCCATCCCCCACATCTACGCCATCGGCGACGTGGCAGAGgt.................. : 70393 329 : 11 >>>> GlyArgProGluLeuThrProThrAlaIleMetAlaGlyArgLeuLeuAl : 344 |||||||||||||||||||||||||||||||||||||||||||||||||| ++GlyArgProGluLeuThrProThrAlaIleMetAlaGlyArgLeuLeuAl 70394 : ........agGGGCGGCCGGAGCTGACACCCACAGCCATCATGGCCGGGCGGCTCCTGGC : 71464 345 : aGlnArgLeuSerGlyArgThrSerAspLeuMetAspTyrSerSer >>>> Target : 360 |||||||||||||||||||||||||||||||||||||||||||||| 37 aGlnArgLeuSerGlyArgThrSerAspLeuMetAspTyrSerSer++ 71465 : CCAGCGGCTGAGCGGCCGGACCTCAGACCTGATGGACTACAGCAGCgt............ : 71514 361 : Intron 12 >>>> ValProThrThrValPheThrProLeuGluTyrGlyCysValGl : 374 9 bp |||||||||||||||||||||||||||||||||||||||||||| ++ValProThrThrValPheThrProLeuGluTyrGlyCysValGl 71515 : ..............agGTCCCCACGACTGTCTTCACTCCCCTGGAGTATGGCTGCGTGGG : 71933 375 : yLeuSerGluGluAlaAlaValAlaArgHisGlyGluGluHisValGluValSerProGl : 394 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| yLeuSerGluGluAlaAlaValAlaArgHisGlyGluGluHisValGluValSerProGl 71934 : GCTGTCAGAGGAGGCAGCCGTGGCTCGCCATGGAGAAGAGCACGTGGAGGTGAGTCCAGG : 71993 395 : yProGly{V} >>>> Target Intron 13 >>>> {al}GlyCysSerMetGlnA : 403 |||||||{!} 1324 bp { !}!.!! !..!||| !. yProGly{A}+- +-{sp}AlaPheGlnMetValC 71994 : CCCCGGG{G}gg..........................ac{AT}GCCTTTCAGATGGTGT : 73344 404 : laProValAlaProThrProLeuValLeuGlyLeuHisPheLeuGlyProAsnAlaGlyG : 423 .!! ! !! !||| !!! !|||||||||||||||||||||||||||||||||||||||| ysLeuArgGluProProGlnLeuValLeuGlyLeuHisPheLeuGlyProAsnAlaGlyG 73345 : GTCTGCGGGAGCCCCCACAGCTGGTGCTGGGCCTGCACTTCCTCGGCCCCAACGCAGGCG : 73404 424 : luValIleGlnGlyPheAlaLeuGlyIle{Ly} >>>> Target Intron 14 >>> : 433 |||||! !|||||||||||||||||||||{||} 641 bp luValThrGlnGlyPheAlaLeuGlyIle{Ly}++ 73405 : AAGTTACTCAGGGGTTTGCCCTGGGGATC{AA}gt......................... : 73438 434 : > {s}CysGlyAlaSerTyrGlnGlnLeuMetArgThrValGlyIleHisProThrCys : 451 {|}||||||||||||!:!||||||:!!!!:||||||||||||||||||||||||||| ++{s}CysGlyAlaSerPheGlnGlnValIleArgThrValGlyIleHisProThrCys 73439 : .ag{G}TGTGGGGCCTCCTTCCAGCAGGTGATACGCACGGTGGGCATCCACCCCACCTGT : 74129 452 : AlaGluGluValAlaLysLeuArgIleSerLysArgSerGlyLeuAspProThrValThr : 471 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AlaGluGluValAlaLysLeuArgIleSerLysArgSerGlyLeuAspProThrValThr 74130 : GCGGAGGAGGTGGCCAAGCTCCGCATCTCCAAGCGCTCCGGCCTGGACCCCACGGTGACC : 74189 472 : GlyCysUnkGly : 475 |||||| ||| GlyCys***Gly 74190 : GGCTGCTGAGGC : 74203 vulgar: SPP00000280_2.0 0 475 . NIVO01019577.1:subseq(186204,123436) 49999 74203 + 2179 M 23 69 S 0 1 5 0 2 I 0 3247 3 0 2 S 1 2 M 18 54 S 0 1 5 0 2 I 0 114 3 0 2 S 1 2 M 46 138 S 0 2 5 0 2 I 0 344 3 0 2 S 1 1 M 24 72 S 0 2 5 0 2 I 0 613 3 0 2 S 1 1 M 26 78 5 0 2 I 0 410 3 0 2 M 21 63 5 0 2 I 0 861 3 0 2 M 23 69 S 0 2 5 0 2 I 0 6121 3 0 2 S 1 1 M 6 18 S 0 1 5 0 2 I 0 599 3 0 2 S 1 2 M 30 90 5 0 2 I 0 1102 3 0 2 M 58 174 S 0 1 5 0 2 I 0 5959 3 0 2 S 1 2 M 45 135 5 0 2 I 0 1021 3 0 2 M 32 96 5 0 2 I 0 375 3 0 2 M 37 111 S 0 1 5 0 2 I 0 1320 3 0 2 S 1 2 M 35 105 S 0 2 5 0 2 I 0 637 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-24 ##type DNA # # # seqname source feature start end score strand frame attributes # NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local gene 50000 74203 2179 + . gene_id 1 ; sequence SPP00000280_2.0 ; gene_orientation + NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 50000 50069 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 50000 50069 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 50070 50071 . + . intron_id 1 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 50070 53320 . + . intron_id 1 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 53319 53320 . + . intron_id 0 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 53321 53377 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 53321 53377 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 53378 53379 . + . intron_id 2 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 53378 53495 . + . intron_id 2 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 53494 53495 . + . intron_id 1 ; splice_site "ag" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 53496 53637 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 53496 53637 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 53638 53639 . + . intron_id 3 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 53638 53985 . + . intron_id 3 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 53984 53985 . + . intron_id 2 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 53986 54060 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 53986 54060 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 54061 54062 . + . intron_id 4 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 54061 54677 . + . intron_id 4 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 54676 54677 . + . intron_id 3 ; splice_site "ag" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 54678 54756 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 54678 54756 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 54757 54758 . + . intron_id 5 ; splice_site "gt" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 54757 55170 . + . intron_id 5 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 55169 55170 . + . intron_id 4 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 55171 55233 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 55171 55233 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 55234 55235 . + . intron_id 6 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 55234 56098 . + . intron_id 6 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 56097 56098 . + . intron_id 5 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 56099 56169 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 56099 56169 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 56170 56171 . + . intron_id 7 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 56170 62294 . + . intron_id 7 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 62293 62294 . + . intron_id 6 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 62295 62314 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 62295 62314 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 62315 62316 . + . intron_id 8 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 62315 62917 . + . intron_id 8 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 62916 62917 . + . intron_id 7 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 62918 63009 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 62918 63009 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 63010 63011 . + . intron_id 9 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 63010 64115 . + . intron_id 9 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 64114 64115 . + . intron_id 8 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 64116 64290 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 64116 64290 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 64291 64292 . + . intron_id 10 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 64291 70253 . + . intron_id 10 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 70252 70253 . + . intron_id 9 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 70254 70390 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 70254 70390 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 70391 70392 . + . intron_id 11 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 70391 71415 . + . intron_id 11 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 71414 71415 . + . intron_id 10 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 71416 71511 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 71416 71511 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 71512 71513 . + . intron_id 12 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 71512 71890 . + . intron_id 12 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 71889 71890 . + . intron_id 11 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 71891 72002 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 71891 72002 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 72003 72004 . + . intron_id 13 ; splice_site "GG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 72003 73326 . + . intron_id 13 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 73325 73326 . + . intron_id 12 ; splice_site "AC" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 73327 73435 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 73327 73435 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice5 73436 73437 . + . intron_id 14 ; splice_site "GT" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local intron 73436 74076 . + . intron_id 14 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local splice3 74075 74076 . + . intron_id 13 ; splice_site "AG" NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local cds 74077 74203 . + . NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local exon 74077 74203 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186204,123436) exonerate:protein2genome:local similarity 50000 74203 2179 + . alignment_id 1 ; Query SPP00000280_2.0 ; Align 50000 1 69 ; Align 53323 25 54 ; Align 53498 44 138 ; Align 53987 91 72 ; Align 54679 116 78 ; Align 55171 142 63 ; Align 56099 163 69 ; Align 62296 187 18 ; Align 62920 194 90 ; Align 64116 224 174 ; Align 70256 283 135 ; Align 71416 328 96 ; Align 71891 360 111 ; Align 73329 398 105 ; Align 74078 434 126 # --- END OF GFF DUMP --- # -- completed exonerate analysis