genewise output Score 930.91 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info sp|Q9N2I8|TRXR2 1 MAALRGAAARFRGRAPGGARGAA MAALRGAAARF GRAPGGARGAA MAALRGAAARFPGRAPGGARGAA G:G[ggc] NIVO01019577.1:48320 aggccggggctcgcgcgggcgggGGTCAGCG Intron 1 CAGGC tcctggcccgtcggccggcggcc <1-----[48390:49994]-1> ggggcagcgtcgccggcgggcca sp|Q9N2I8|TRXR2 25 RQCYDLLVIGGGSGGLACAKE AQ RQ YDLLVIGGGSGGLACAKE AQ RQRYDLLVIGGGSGGLACAKE A:A[gct] AQ NIVO01019577.1:49997 ccctgccgagggtggcgtgagGGTGCGTG Intron 2 TAGCTgc gagaattttgggcggtcgcaa <1-----[50061:53311]-1> ca gagtccggcctacccgcccga cg sp|Q9N2I8|TRXR2 49 LGKKVAVLDYVEPSPQ TRWGLGG LGKKVAVLDYVEPSP+ TRWGLGG LGKKVAVLDYVEPSPR G:G[ggc] TRWGLGG NIVO01019577.1:53320 cgaagggcgtggctccGGTAGGCC Intron 3 CAGGCaatgcgg tgaatcttaatacccg <1-----[53369:53486]-1> cgggtgg gggggcggccggtcca cggcccc sp|Q9N2I8|TRXR2 73 TCVNVGCIPKKLMHQAALLGGMIRDAPHYGWGVAQAPHS TCVNVGCIPKKLMHQAALLGGMIRDAPHYGW VAQAPH TCVNVGCIPKKLMHQAALLGGMIRDAPHYGWRVAQAPHD NIVO01019577.1:53510 atgaggtacaacaccggccggaacggcctgtcggcgccg cgtatggtcaattaaccttggttgaccaagggtcaccaa ccgtcccccggggcggggggcgccccccccgcgcgcacc sp|Q9N2I8|TRXR2 112 ATLADAVQNHVKSLNWGHRIQLQ AT+ADAVQNHVKSLNWGHR+QLQ W:W[tgg] ATMADAVQNHVKSLNWGHRVQLQ NIVO01019577.1:53627 TGGTGAGGG Intron 4 CAGGgaaggggcacgatcatgccgccc <2-----[53629:53976]-2> cctcactaaatactaggagtata aaggtccgccggcgcgccccggg sp|Q9N2I8|TRXR2 136 D KVKYFNVKASFVDTHTVCGVSK D KVKY+NVKASFVDTHTVCGVSK D R:R[agg] KVKYLNVKASFVDTHTVCGVSK NIVO01019577.1:54047 gAGGTACCAC Intron 5 CAGGagattagagatggacagtggta a <2-----[54052:54668]-2> ataatatacgttacactggtca c acgtgccgcctccgcgtctcca sp|Q9N2I8|TRXR2 160 GGEE TLLSAEHIVIATGGRPRYPTH GGEE TLLSAEHIVIATGGRPRYPTH GGEE TLLSAEHIVIATGGRPRYPTH NIVO01019577.1:54736 ggggGTGAGCA Intron 6 CAGacctggcagagaggccctcac ggaa<0-----[54748:55161]-0>cttccaatttccgggcgacca tggg tgtgcgctctccatgggccgc sp|Q9N2I8|TRXR2 185 IEGALEYGITSDDLFWLKESPGK IEGALEYGITSDDLFWLKESPGK IEGALEYGITSDDLFWLKESPGK NIVO01019577.1:55225 GTGAGTG Intron 7 CAGagggtgtgaaaggcttcagtcga <0-----[55225:56089]-0>tagctaagtcgaattgtaaccga catcgacgcgctcccgggactga sp|Q9N2I8|TRXR2 208 LVVGAS LVVGAS T:T[acg] LVVGAS NIVO01019577.1:56159 ACGTAAGGC Intron 8 CAGGtgggga <2-----[56161:62285]-2> tttgcg ggcgcc sp|Q9N2I8|TRXR2 215 VALECAGLLTGLGLDTTVMIRSV VALECAG LTGLGLDTTVMIRSV Y:Y[tac] VALECAGFLTGLGLDTTVMIRSV NIVO01019577.1:62305 TGTATCCT Intron 9 CAGACggcgtggtcagcgtgaagaacag <1-----[62306:62908]-1> tctagcgttcgtgtacctttggt acggcgccccgccgccccgaccg sp|Q9N2I8|TRXR2 239 PLRAFDQ QMASLVTEHMAGHGTRILR PLRAFDQ QMA LVTEHMAGHGTR+LR PLRAFDQ QMALLVTEHMAGHGTRVLR NIVO01019577.1:62980 cccgtgcGTAACGC Intron 10 CAGcagtcgagcaggcgacgcc ctgctaa<0-----[63001:64106]-0>atctttcaatcgagcgttg ccgcccg agtgtccgcgtccccgcgg sp|Q9N2I8|TRXR2 265 GCAPEKVEKLPGQQLRVTWVDLTSDRKDAGTFDTVLWAI GCAPE+VEKLPGQQLRVTWVDL SDRKDAGTFDTVLWAI GCAPERVEKLPGQQLRVTWVDLASDRKDAGTFDTVLWAI NIVO01019577.1:64164 gtgcgaggaccgccccgatggcgtgcagggatgagctga ggccagtaatcgaatgtcgtatccagaacgctacttgct ccccgggggcacggccccggctcgcggtgcctccgcgca sp|Q9N2I8|TRXR2 304 RVPETASLNLEKAGVHTNPVTGK RVPETASLNLEKAGV TNPVTGK G:G[ggc] RVPETASLNLEKAGVRTNPVTGK NIVO01019577.1:64281 GGTAAGGG Intron 11 CAGGCcgcgagacatgagggcaacgaga <1-----[64282:70244]-1> gtcaccgtataacgtgcactcga ataacgtgtgagttgtgccctgg sp|Q9N2I8|TRXR2 328 ILVDAQETTSVPHIYAIGDVAE GRPE I VDAQE TS+PHIYAIGDVAE GRPE IFVDAQEATSIPHIYAIGDVAE GRPE NIVO01019577.1:70316 atgggcggataccatgagggggGTACGGC Intron 12 CAGgccg tttacaaccctcatactgatca<0-----[70382:71406]-0>ggca ccttcgaccccccccccccgag gggg sp|Q9N2I8|TRXR2 354 LTPTAIMAGRLLAQRLSGRTSDLMDYSS LTPTAIMAGRLLAQRLSGRTSDLMDYSS LTPTAIMAGRLLAQRLSGRTSDLMDYSS NIVO01019577.1:71419 cacagaaggcccgcccagcatgcagtaaGTGAGTG Intron 13 tccccttcggttcagtgggccattaagg<0-----[71503:71881] gacaccgcggcgcgggccgcacggcccc sp|Q9N2I8|TRXR2 382 VPTTVFTPLEYGCVGLSEEAAVARHGEEHVE VPTTVFTPLEYGCVGLSEEAAVARHGEEHVE VPTTVFTPLEYGCVGLSEEAAVARHGEEHVE NIVO01019577.1:71879 CAGgcaagtaccgtgtggctggggggccgggcgg -0>tcccttcctaaggtgtcaacctcgagaaata ccgtcctcggtccgggaggacgtctaagcgg sp|Q9N2I8|TRXR2 413 VYHAFYKPLEFTVPQRDASQCYIK VYHAFYKPLEFTVPQRDASQCY+K VYHAFYKPLEFTVPQRDASQCYVK NIVO01019577.1:71975 GTGAGTC Intron 14 CAGgtcgttaccgtagcccggtcttga <0-----[71975:73187]-0>taactaactatctcagaccagata tctgctagggctccggtatgccag sp|Q9N2I8|TRXR2 437 MVCLREPPQLVLGLHFLGPNAGEVIQ MVCLREPPQLVLGLHFLGPNAGEV Q MVCLREPPQLVLGLHFLGPNAGEVTQ NIVO01019577.1:73260 GTGAGTG Intron 15 CAGagtccgccccgcgcctcgcaggggac <0-----[73260:73328]-0>ttgtgaccatttgtattgcacgatca ggtgggcaggggcgccccccacattg sp|Q9N2I8|TRXR2 463 GFALGI CGASYQQLMRTVGIHPT GFALGI CGAS+QQ++RTVGIHPT GFALGI K:K[aag] CGASFQQVIRTVGIHPT NIVO01019577.1:73407 gtgcgaAAGTGAGTC Intron 16 CAGGtggttccgacaggacca gtctgt <2-----[73427:74067]-2> ggcctaattgctgtacc gtcggc tgcccgggacggccccc sp|Q9N2I8|TRXR2 487 CAEEVAKLRISKRSGLDPTVTGC CAEEVAKLRISKRSGLDPTVTGC CAEEVAKLRISKRSGLDPTVTGC NIVO01019577.1:74120 tgggggaccatactgcgcagagt gcaatcatgtcagcgtacctcgg tggggcgccccgcccgccggccc // Making a G in phase 1 intron Making a A in phase 1 intron Making a G in phase 1 intron Making a W in phase 2 intron Making a R in phase 2 intron Making a T in phase 2 intron Making a Y in phase 1 intron Making a G in phase 1 intron Making a K in phase 2 intron >NIVO01019577.1:subseq(186213,124194).pep MAALRGAAARFPGRAPGGARGAAGRQRYDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVE PSPRGTRWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWRVAQAPHDWATMADAVQ NHVKSLNWGHRVQLQDRKVKYLNVKASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPR YPTHIEGALEYGITSDDLFWLKESPGKTLVVGASYVALECAGFLTGLGLDTTVMIRSVPL RAFDQQMALLVTEHMAGHGTRVLRGCAPERVEKLPGQQLRVTWVDLASDRKDAGTFDTVL WAIGRVPETASLNLEKAGVRTNPVTGKIFVDAQEATSIPHIYAIGDVAEGRPELTPTAIM AGRLLAQRLSGRTSDLMDYSSVPTTVFTPLEYGCVGLSEEAAVARHGEEHVEVYHAFYKP LEFTVPQRDASQCYVKMVCLREPPQLVLGLHFLGPNAGEVTQGFALGIKCGASFQQVIRT VGIHPTCAEEVAKLRISKRSGLDPTVTGC // >NIVO01019577.1:subseq(186213,124194).[48320:74188].sp ATGGCGGCGCTGCGCGGAGCGGCCGCGCGTTTCCCGGGCCGCGCGCCGGGCGGGGCGCGG GGCGCCGCAGGCCGGCAACGGTATGACCTCCTGGTGATCGGCGGTGGATCCGGCGGCCTG GCCTGCGCCAAGGAAGCTGCCCAGCTGGGGAAGAAGGTGGCCGTGCTGGACTACGTGGAG CCTTCCCCCCGAGGCACCAGGTGGGGCCTCGGCGGCACCTGCGTGAATGTCGGCTGCATC CCCAAGAAGCTGATGCACCAGGCGGCGCTGCTGGGGGGCATGATCCGCGACGCCCCCCAC TACGGCTGGCGCGTGGCCCAGGCCCCACACGACTGGGCAACAATGGCGGATGCCGTCCAG AACCACGTGAAGTCCCTGAACTGGGGCCACCGCGTCCAGCTGCAGGACAGGAAAGTCAAG TATTTGAACGTCAAGGCCAGCTTTGTCGACACGCACACGGTTTGCGGTGTCTCCAAAGGT GGGGAGGAGACTCTGCTTTCGGCCGAGCACATTGTCATTGCCACCGGAGGTCGGCCGCGG TACCCCACGCACATCGAAGGTGCCTTGGAATACGGGATCACGAGCGATGACCTCTTCTGG CTGAAGGAATCCCCTGGGAAAACGTTGGTGGTCGGGGCCAGCTACGTAGCCCTGGAGTGC GCGGGCTTCCTCACCGGGCTCGGCTTGGACACCACCGTCATGATACGCAGCGTGCCCCTC CGGGCCTTCGACCAGCAAATGGCTTTGCTTGTCACCGAGCACATGGCTGGCCACGGCACC CGGGTCCTGCGGGGCTGCGCCCCCGAGAGGGTGGAGAAGCTCCCAGGCCAGCAGCTCCGC GTCACCTGGGTGGACCTTGCCTCGGACCGGAAGGATGCGGGCACCTTTGACACCGTGCTC TGGGCCATAGGCCGAGTTCCAGAAACCGCGAGTCTGAATTTGGAAAAGGCTGGTGTGCGT ACGAACCCCGTCACTGGGAAGATCTTCGTTGATGCCCAGGAAGCCACCTCCATCCCCCAC ATCTACGCCATCGGCGACGTGGCAGAGGGGCGGCCGGAGCTGACACCCACAGCCATCATG GCCGGGCGGCTCCTGGCCCAGCGGCTGAGCGGCCGGACCTCAGACCTGATGGACTACAGC AGCGTCCCCACGACTGTCTTCACTCCCCTGGAGTATGGCTGCGTGGGGCTGTCAGAGGAG GCAGCCGTGGCTCGCCATGGAGAAGAGCACGTGGAGGTTTACCATGCGTTCTATAAACCG CTGGAGTTCACTGTCCCCCAGCGGGATGCATCTCAGTGCTACGTAAAGATGGTGTGTCTG CGGGAGCCCCCACAGCTGGTGCTGGGCCTGCACTTCCTCGGCCCCAACGCAGGCGAAGTT ACTCAGGGGTTTGCCCTGGGGATCAAGTGTGGGGCCTCCTTCCAGCAGGTGATACGCACG GTGGGCATCCACCCCACCTGTGCGGAGGAGGTGGCCAAGCTCCGCATCTCCAAGCGCTCC GGCCTGGACCCCACGGTGACCGGCTGC // NIVO01019577.1:subseq(186213,124194) GeneWise match 48320 74188 930.91 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 48320 48389 0.00 + 0 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 48390 49994 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 49995 50060 0.00 + 2 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 50061 53311 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 53312 53368 0.00 + 2 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 53369 53486 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 53487 53628 0.00 + 2 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 53629 53976 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 53977 54051 0.00 + 1 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 54052 54668 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 54669 54747 0.00 + 1 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 54748 55161 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 55162 55224 0.00 + 0 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 55225 56089 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 56090 56160 0.00 + 0 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 56161 62285 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 62286 62305 0.00 + 1 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 62306 62908 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 62909 63000 0.00 + 2 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 63001 64106 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 64107 64281 0.00 + 0 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 64282 70244 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 70245 70381 0.00 + 2 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 70382 71406 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 71407 71502 0.00 + 0 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 71503 71881 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 71882 71974 0.00 + 0 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 71975 73187 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 73188 73259 0.00 + 0 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 73260 73328 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 73329 73426 0.00 + 0 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise intron 73427 74067 0.00 + . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 74068 74188 0.00 + 1 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 // genewise output Score 21.89 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info sp|Q9N2I8|TRXR2 5 RGAAARFRGRAPGGAR RGA + GR PGGAR RGAGPALPGRRPGGAR NIVO01019577.1-63022 cgggcgtcgcacgggc ggcgcctcgggcggcg gcacggattagcagac // >NIVO01019577.1:subseq(186213,124194).pep RGAGPALPGRRPGGAR // >NIVO01019577.1:subseq(186213,124194).[63022:62973].sp CGGGGCGCAGGCCCGGCGTTACCTGGTCGAAGGCCCGGAGGGGCACGC // NIVO01019577.1:subseq(186213,124194) GeneWise match 63022 62975 21.89 - . NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 NIVO01019577.1:subseq(186213,124194) GeneWise cds 63022 62975 0.00 - 0 NIVO01019577.1:subseq(186213,124194)-genewise-prediction-1 //