Command line: [exonerate -m p2g --showtargetgff -q ../TXNRD2-UniProt-human.fa -t TXNRD2-UniProt-NIVO01019577.1.subseq] Hostname: [sitdoc] C4 Alignment: ------------ Query: sp|Q9N2I8|TRXR2_BOVIN Thioredoxin reductase 2, mitochondrial OS=Bos taurus GN=TXNRD2 PE=1 SV=2 Target: NIVO01019577.1:subseq(186213,124194) Ammotragus lervia isolate NAZ scaffold5500_len738321_cov71, whole genome shotgun sequence Model: protein2genome:local Raw score: 2455 Query range: 0 -> 511 Target range: 48319 -> 74194 1 : MetAlaAlaLeuArgGlyAlaAlaAlaArgPheArgGlyArgAlaProGlyGlyAlaArg : 20 |||||||||||||||||||||||||||||||||! !|||||||||||||||||||||||| MetAlaAlaLeuArgGlyAlaAlaAlaArgPheProGlyArgAlaProGlyGlyAlaArg 48320 : ATGGCGGCGCTGCGCGGAGCGGCCGCGCGTTTCCCGGGCCGCGCGccgggcggggcgcgg : 48377 21 : GlyAlaAla{G} >>>> Target Intron 1 >>>> {ly}ArgGlnCysTyrAsp : 29 |||||||||{|} 1605 bp {||}|||||| ! |||||| GlyAlaAla{G}++ ++{ly}ArgGlnArgTyrAsp 48378 : ggcgccgCA{G}gt.........................ag{GC}CGGCAACGGTATGAC : 50009 30 : LeuLeuValIleGlyGlyGlySerGlyGlyLeuAlaCysAlaLysGlu{A} >>>> Ta : 46 ||||||||||||||||||||||||||||||||||||||||||||||||{|} LeuLeuValIleGlyGlyGlySerGlyGlyLeuAlaCysAlaLysGlu{A}++ 50010 : CTCCTGGTGATCGGCGGTGGATCCGGCGGCCTGGCCTGCGCCAAGGAA{G}gt....... : 50063 47 : rget Intron 2 >>>> {la}AlaGlnLeuGlyLysLysValAlaValLeuAspTyr : 58 3251 bp {||}|||||||||||||||||||||||||||||||||||| ++{la}AlaGlnLeuGlyLysLysValAlaValLeuAspTyr 50064 : ..................ag{CT}GCCCAGCTGGGGAAGAAGGTGGCCGTGCTGGACTAC : 53347 59 : ValGluProSerProGln{G} >>>> Target Intron 3 >>>> {ly}ThrArg : 67 |||||||||||||||!:!{|} 118 bp {||}|||||| ValGluProSerProArg{G}++ ++{ly}ThrArg 53348 : GTGGAGCCTTCCCCCCGA{G}gt.........................ag{gc}acCAGG : 53492 68 : TrpGlyLeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGln : 87 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| TrpGlyLeuGlyGlyThrCysValAsnValGlyCysIleProLysLysLeuMetHisGln 53493 : TGGGGCCTCGGCGGCACCTGCGTGAATGTCGGCTGCATCCCCAAGAAGCTGATGCACCAG : 53552 88 : AlaAlaLeuLeuGlyGlyMetIleArgAspAlaProHisTyrGlyTrpGlyValAlaGln : 107 |||||||||||||||||||||||||||||||||||||||||||||||| !!||||||||| AlaAlaLeuLeuGlyGlyMetIleArgAspAlaProHisTyrGlyTrpArgValAlaGln 53553 : GCGGCGCTGCTGGGGGGCATGATCCGCGACGCCCCCCACTACGGCTGGCGCGTGGCCCAG : 53612 108 : AlaProHisSer{Tr} >>>> Target Intron 4 >>>> {p}AlaThrLeuAla : 116 |||||||||..!{||} 348 bp {|}||||||:!!||| AlaProHisAsp{Tr}++ ++{p}AlaThrMetAla 53613 : GCCCCACACGAC{TG}gt.........................ag{G}GCAACAATGGCG : 53987 117 : AspAlaValGlnAsnHisValLysSerLeuAsnTrpGlyHisArgIleGlnLeuGlnAsp : 136 |||||||||||||||||||||||||||||||||||||||||||||:!!|||||||||||| AspAlaValGlnAsnHisValLysSerLeuAsnTrpGlyHisArgValGlnLeuGlnAsp 53988 : GATGCCGTCCAGAACCACGTGAAGTCCCTGAACTGGGGCCACCGCGTCCAGCTGCAGGAC : 54047 137 : {Ar} >>>> Target Intron 5 >>>> {g}LysValLysTyrPheAsnValLys : 145 {||} 617 bp {|}||||||||||||!!.||||||||| {Ar}++ ++{g}LysValLysTyrLeuAsnValLys 54048 : {AG}gt.........................ag{G}AAAGTCAAGTATTTGAACGTCAAG : 54691 146 : AlaSerPheValAspThrHisThrValCysGlyValSerLysGlyGlyGluGlu >>>> : 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||| AlaSerPheValAspThrHisThrValCysGlyValSerLysGlyGlyGluGlu++ 54692 : GCCAGCTTTGTCGACACGCACACGGTTTGCGGTGTCTCcaaaggtggggaggaggt.... : 54750 165 : Target Intron 6 >>>> ThrLeuLeuSerAlaGluHisIleValIleAlaThrG : 176 414 bp ||||||||||||||||||||||||||||||||||||| ++ThrLeuLeuSerAlaGluHisIleValIleAlaThrG 54751 : .....................agACTCTGCTTTCGGCCGAGCACATTGTCATTGCCACCG : 55198 177 : lyGlyArgProArgTyrProThrHis >>>> Target Intron 7 >>>> IleGl : 186 |||||||||||||||||||||||||| 865 bp ||||| lyGlyArgProArgTyrProThrHis++ ++IleGl 55199 : GAGGTCGGCCGCGGTACCCCACGCACgt.........................agATCGA : 56093 187 : uGlyAlaLeuGluTyrGlyIleThrSerAspAspLeuPheTrpLeuLysGluSerProGl : 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| uGlyAlaLeuGluTyrGlyIleThrSerAspAspLeuPheTrpLeuLysGluSerProGl 56094 : AGGTGCCTTGGAATACGGGATCACGAGCGATGACCTCTTCTGGCTGAAGGAATCCCCTGG : 56153 207 : yLys{Th} >>>> Target Intron 8 >>>> {r}LeuValValGlyAlaSer{T : 215 ||||{||} 6125 bp {|}||||||||||||||||||{| yLys{Th}++ ++{r}LeuValValGlyAlaSer{T 56154 : GAAA{AC}gt.........................ag{G}TTGGTGGTCGGGGCCAGC{T : 62305 216 : } >>>> Target Intron 9 >>>> {yr}ValAlaLeuGluCysAlaGlyLeuLe : 224 } 603 bp {||}|||||||||||||||||||||!!!|| }++ ++{yr}ValAlaLeuGluCysAlaGlyPheLe 62306 : }gt.........................ag{AC}GTAGCCCTGGAGTGCGCGGGCTTCCT : 62935 225 : uThrGlyLeuGlyLeuAspThrThrValMetIleArgSerValProLeuArgAlaPheAs : 244 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| uThrGlyLeuGlyLeuAspThrThrValMetIleArgSerValProLeuArgAlaPheAs 62936 : CACCGGGCTCGGCTTGGACACCACCGTCATGATACGCAGCGTGCCCCTCCGGGCCTTCGA : 62995 245 : pGln >>>> Target Intron 10 >>>> GlnMetAlaSerLeuValThrGluHi : 254 |||| 1106 bp |||||||||! !|||||||||||||| pGln++ ++GlnMetAlaLeuLeuValThrGluHi 62996 : CCAGgt..........................agCAAATGGCTTTGCTTGTCACCGAGCA : 64131 255 : sMetAlaGlyHisGlyThrArgIleLeuArgGlyCysAlaProGluLysValGluLysLe : 274 ||||||||||||||||||||||:!!|||||||||||||||||||||!:!||||||||||| sMetAlaGlyHisGlyThrArgValLeuArgGlyCysAlaProGluArgValGluLysLe 64132 : CATGGCTGGCCACGGCACCCGGGTCCTGCGGGGCTGCGCCCCCGAGAGGGTGGAGAAGCT : 64191 275 : uProGlyGlnGlnLeuArgValThrTrpValAspLeuThrSerAspArgLysAspAlaGl : 294 |||||||||||||||||||||||||||||||||||||.!!|||||||||||||||||||| uProGlyGlnGlnLeuArgValThrTrpValAspLeuAlaSerAspArgLysAspAlaGl 64192 : CCCAGGCCAGCAGCTCCGCGTCACCTGGGTGGACCTTGCCTCGGACCGGAAGGATGCGGG : 64251 295 : yThrPheAspThrValLeuTrpAlaIle{G} >>>> Target Intron 11 >>>> : 304 ||||||||||||||||||||||||||||{|} 5963 bp yThrPheAspThrValLeuTrpAlaIle{G}++ + 64252 : CACCTTTGACACCGTGCTCTGGGCCATA{G}gt..........................a : 70243 305 : {ly}ArgValProGluThrAlaSerLeuAsnLeuGluLysAlaGlyValHisThrAsnP : 323 {||}|||||||||||||||||||||||||||||||||||||||||||||!.!||||||| +{ly}ArgValProGluThrAlaSerLeuAsnLeuGluLysAlaGlyValArgThrAsnP 70244 : g{GC}CGAGTTCCAGAAACCGcgagtctgaatttggaaaaggCTGGTGTGCGTACGAACC : 70301 324 : roValThrGlyLysIleLeuValAspAlaGlnGluThrThrSerValProHisIleTyrA : 343 |||||||||||||||||!!!|||||||||||||||.!!||||||:!!||||||||||||| roValThrGlyLysIlePheValAspAlaGlnGluAlaThrSerIleProHisIleTyrA 70302 : CCGTCACTGGGAAGATCTTCGTTGATGCCCAGGAAGCCACCTCCATCCCCCACATCTACG : 70361 344 : laIleGlyAspValAlaGlu >>>> Target Intron 12 >>>> GlyArgProG : 353 |||||||||||||||||||| 1025 bp |||||||||| laIleGlyAspValAlaGlu++ ++GlyArgProG 70362 : CCATCGGCGACGTGGCAGAGgt..........................agGGGCGGCCGG : 71416 354 : luLeuThrProThrAlaIleMetAlaGlyArgLeuLeuAlaGlnArgLeuSerGlyArgT : 373 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| luLeuThrProThrAlaIleMetAlaGlyArgLeuLeuAlaGlnArgLeuSerGlyArgT 71417 : AGCTGACACCCACAGCCATCATGGCCGGGCGGCTCCTGGCCCAGCGGCTGAGCGGCCGGA : 71476 374 : hrSerAspLeuMetAspTyrSerSer >>>> Target Intron 13 >>>> ValP : 383 |||||||||||||||||||||||||| 379 bp |||| hrSerAspLeuMetAspTyrSerSer++ ++ValP 71477 : CCTCAGACCTGATGGACTACAGCAGCgt..........................agGTCC : 71885 384 : roThrThrValPheThrProLeuGluTyrGlyCysValGlyLeuSerGluGluAlaAlaV : 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| roThrThrValPheThrProLeuGluTyrGlyCysValGlyLeuSerGluGluAlaAlaV 71886 : CCACGACTGTCTTCACTCCCCTGGAGTATGGCTGCGTGGGGCTGTCAGAGGAGGCAGCCG : 71945 404 : alAlaArgHisGlyGluGluHisValGlu >>>> Target Intron 14 >>>> V : 413 ||||||||||||||||||||||||||||| 1213 bp | alAlaArgHisGlyGluGluHisValGlu++ ++V 71946 : TGGCTCGCCATGGAGAAGAGCACGTGGAGgt..........................agG : 73188 414 : alTyrHisAlaPheTyrLysProLeuGluPheThrValProGlnArgAspAlaSerGlnC : 433 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| alTyrHisAlaPheTyrLysProLeuGluPheThrValProGlnArgAspAlaSerGlnC 73189 : TTTACCATGCGTTCTATAAACCGCTGGAGTTCACTGTCCCCCAGCGGGATGCATCTCAGT : 73248 434 : ysTyrIleLys >>>> Target Intron 15 >>>> MetValCysLeuArgGluP : 443 |||||:!!||| 69 bp ||||||||||||||||||| ysTyrValLys++ ++MetValCysLeuArgGluP 73249 : GCTACGTAAAGgt..........................agATGGTGTGTCTGCGGGAGC : 73347 444 : roProGlnLeuValLeuGlyLeuHisPheLeuGlyProAsnAlaGlyGluValIleGlnG : 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||! !|||| roProGlnLeuValLeuGlyLeuHisPheLeuGlyProAsnAlaGlyGluValThrGlnG 73348 : CCCCACAGCTGGTGCTGGGCCTGCACTTCCTCGGCCCCAACGCAGGCGAAGTTACTCAGG : 73407 464 : lyPheAlaLeuGlyIle{Ly} >>>> Target Intron 16 >>>> {s}CysGly : 471 |||||||||||||||||{||} 641 bp {|}|||||| lyPheAlaLeuGlyIle{Ly}++ ++{s}CysGly 73408 : GGTTTGCCCTGGGGATC{AA}gt..........................ag{G}TGTGGG : 74072 472 : AlaSerTyrGlnGlnLeuMetArgThrValGlyIleHisProThrCysAlaGluGluVal : 491 ||||||!:!||||||:!!!!:||||||||||||||||||||||||||||||||||||||| AlaSerPheGlnGlnValIleArgThrValGlyIleHisProThrCysAlaGluGluVal 74073 : GCCTCCTTCCAGCAGGTGATACGCACGGTGGGCATCCACCCCACCTGTGCGGAGGAGGTG : 74132 492 : AlaLysLeuArgIleSerLysArgSerGlyLeuAspProThrValThrGlyCysUnkGly : 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| AlaLysLeuArgIleSerLysArgSerGlyLeuAspProThrValThrGlyCys***Gly 74133 : GCCAAGCTCCGCATCTCCAAGCGCTCCGGCCTGGACCCCACGGTGACCGGCTGCTGAGGC : 74192 vulgar: sp|Q9N2I8|TRXR2_BOVIN 0 511 . NIVO01019577.1:subseq(186213,124194) 48319 74194 + 2455 M 23 69 S 0 1 5 0 2 I 0 1601 3 0 2 S 1 2 M 21 63 S 0 1 5 0 2 I 0 3247 3 0 2 S 1 2 M 18 54 S 0 1 5 0 2 I 0 114 3 0 2 S 1 2 M 46 138 S 0 2 5 0 2 I 0 344 3 0 2 S 1 1 M 24 72 S 0 2 5 0 2 I 0 613 3 0 2 S 1 1 M 26 78 5 0 2 I 0 410 3 0 2 M 21 63 5 0 2 I 0 861 3 0 2 M 23 69 S 0 2 5 0 2 I 0 6121 3 0 2 S 1 1 M 6 18 S 0 1 5 0 2 I 0 599 3 0 2 S 1 2 M 30 90 5 0 2 I 0 1102 3 0 2 M 58 174 S 0 1 5 0 2 I 0 5959 3 0 2 S 1 2 M 45 135 5 0 2 I 0 1021 3 0 2 M 32 96 5 0 2 I 0 375 3 0 2 M 31 93 5 0 2 I 0 1209 3 0 2 M 24 72 5 0 2 I 0 65 3 0 2 M 32 96 S 0 2 5 0 2 I 0 637 3 0 2 S 1 1 M 42 126 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-12-02 ##type DNA # # # seqname source feature start end score strand frame attributes # NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local gene 48320 74194 2455 + . gene_id 1 ; sequence sp|Q9N2I8|TRXR2_BOVIN ; gene_orientation + NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 48320 48389 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 48320 48389 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 48390 48391 . + . intron_id 1 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 48390 49994 . + . intron_id 1 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 49993 49994 . + . intron_id 0 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 49995 50060 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 49995 50060 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 50061 50062 . + . intron_id 2 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 50061 53311 . + . intron_id 2 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 53310 53311 . + . intron_id 1 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 53312 53368 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 53312 53368 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 53369 53370 . + . intron_id 3 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 53369 53486 . + . intron_id 3 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 53485 53486 . + . intron_id 2 ; splice_site "ag" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 53487 53628 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 53487 53628 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 53629 53630 . + . intron_id 4 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 53629 53976 . + . intron_id 4 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 53975 53976 . + . intron_id 3 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 53977 54051 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 53977 54051 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 54052 54053 . + . intron_id 5 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 54052 54668 . + . intron_id 5 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 54667 54668 . + . intron_id 4 ; splice_site "ag" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 54669 54747 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 54669 54747 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 54748 54749 . + . intron_id 6 ; splice_site "gt" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 54748 55161 . + . intron_id 6 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 55160 55161 . + . intron_id 5 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 55162 55224 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 55162 55224 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 55225 55226 . + . intron_id 7 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 55225 56089 . + . intron_id 7 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 56088 56089 . + . intron_id 6 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 56090 56160 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 56090 56160 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 56161 56162 . + . intron_id 8 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 56161 62285 . + . intron_id 8 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 62284 62285 . + . intron_id 7 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 62286 62305 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 62286 62305 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 62306 62307 . + . intron_id 9 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 62306 62908 . + . intron_id 9 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 62907 62908 . + . intron_id 8 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 62909 63000 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 62909 63000 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 63001 63002 . + . intron_id 10 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 63001 64106 . + . intron_id 10 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 64105 64106 . + . intron_id 9 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 64107 64281 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 64107 64281 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 64282 64283 . + . intron_id 11 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 64282 70244 . + . intron_id 11 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 70243 70244 . + . intron_id 10 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 70245 70381 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 70245 70381 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 70382 70383 . + . intron_id 12 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 70382 71406 . + . intron_id 12 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 71405 71406 . + . intron_id 11 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 71407 71502 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 71407 71502 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 71503 71504 . + . intron_id 13 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 71503 71881 . + . intron_id 13 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 71880 71881 . + . intron_id 12 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 71882 71974 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 71882 71974 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 71975 71976 . + . intron_id 14 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 71975 73187 . + . intron_id 14 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 73186 73187 . + . intron_id 13 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 73188 73259 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 73188 73259 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 73260 73261 . + . intron_id 15 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 73260 73328 . + . intron_id 15 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 73327 73328 . + . intron_id 14 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 73329 73426 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 73329 73426 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice5 73427 73428 . + . intron_id 16 ; splice_site "GT" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local intron 73427 74067 . + . intron_id 16 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local splice3 74066 74067 . + . intron_id 15 ; splice_site "AG" NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local cds 74068 74194 . + . NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local exon 74068 74194 . + . insertions 0 ; deletions 0 NIVO01019577.1:subseq(186213,124194) exonerate:protein2genome:local similarity 48320 74194 2455 + . alignment_id 1 ; Query sp|Q9N2I8|TRXR2_BOVIN ; Align 48320 1 69 ; Align 49997 25 63 ; Align 53314 47 54 ; Align 53489 66 138 ; Align 53978 113 72 ; Align 54670 138 78 ; Align 55162 164 63 ; Align 56090 185 69 ; Align 62287 209 18 ; Align 62911 216 90 ; Align 64107 246 174 ; Align 70247 305 135 ; Align 71407 350 96 ; Align 71882 382 93 ; Align 73188 413 72 ; Align 73329 437 96 ; Align 74069 470 126 # --- END OF GFF DUMP --- # -- completed exonerate analysis