genewise output Score 767.82 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000035_1.0 35 AGQRDYDLLVVGGGSGGLACAKE AG++ YDLLV+GGGSGGLACAKE AGRQRYDLLVIGGGSGGLACAKE A:A[gct] NIVO01019577.1:46680 ggccctgccgagggtggcgtgagGGTGCGTG Intron 1 TAGCT cggagaattttgggcggtcgcaa <1-----[46750:50000]-1> acgagtccggcctacccgcccga SPP00000035_1.0 59 AQLGRKVAVVDYVEPSPQ TRWGL AQLG+KVAV+DYVEPSP+ TRWGL AQLGKKVAVLDYVEPSPR G:G[ggc] TRWGL NIVO01019577.1:50003 gccgaagggcgtggctccGGTAGGCC Intron 2 CAGGCaatgc catgaatcttaatacccg <1-----[50058:50175]-1> cgggt cggggggcggccggtcca cggcc SPP00000035_1.0 83 GGTCVNVGCIPKKLMHQAALLGGLIQDAPNYGWEVAQPVPHD GGTCVNVGCIPKKLMHQAALLGG+I+DAP+YGW VAQ PHD GGTCVNVGCIPKKLMHQAALLGGMIRDAPHYGWRVAQ-APHD NIVO01019577.1:50193 ggatgaggtacaacaccggccggaacggcctgtcggc gccg ggcgtatggtcaattaaccttggttgaccaagggtca ccaa ccccgtcccccggggcggggggcgccccccccgcgcg cacc SPP00000035_1.0 125 RKMAEAVQNHVKSLNWGHRVQLQ MA+AVQNHVKSLNWGHRVQLQ W:W[tgg] ATMADAVQNHVKSLNWGHRVQLQ NIVO01019577.1:50316 TGGTGAGGG Intron 3 CAGGgaaggggcacgatcatgccgccc <2-----[50318:50665]-2> cctcactaaatactaggagtata aaggtccgccggcgcgccccggg SPP00000035_1.0 149 D KVKYFNIKASFVDEHTVCGVAK D KVKY+N+KASFVD HTVCGV+K D R:R[agg] KVKYLNVKASFVDTHTVCGVSK NIVO01019577.1:50736 gAGGTACCAC Intron 4 CAGGagattagagatggacagtggta a <2-----[50741:51357]-2> ataatatacgttacactggtca c acgtgccgcctccgcgtctcca SPP00000035_1.0 173 GGKE ILLSADHIIIATGGRPRYPTH GG+E LLSA+HI+IATGGRPRYPTH GGEE TLLSAEHIVIATGGRPRYPTH NIVO01019577.1:51425 ggggGTGAGCA Intron 5 CAGacctggcagagaggccctcac ggaa<0-----[51437:51850]-0>cttccaatttccgggcgacca tggg tgtgcgctctccatgggccgc SPP00000035_1.0 198 IEGALEYGITSDDIFWLKESPGK IEGALEYGITSDD+FWLKESPGK IEGALEYGITSDDLFWLKESPGK NIVO01019577.1:51914 GTGAGTG Intron 6 CAGagggtgtgaaaggcttcagtcga <0-----[51914:52778]-0>tagctaagtcgaattgtaaccga catcgacgcgctcccgggactga SPP00000035_1.0 221 LVVGAS LVVGAS T:T[acg] LVVGAS NIVO01019577.1:52848 ACGTAAGGC Intron 7 CAGGtgggga <2-----[52850:58974]-2> tttgcg ggcgcc SPP00000035_1.0 228 VALECAGFLTGIGLDTTIMMRSI VALECAGFLTG+GLDTT+M+RS+ Y:Y[tac] VALECAGFLTGLGLDTTVMIRSV NIVO01019577.1:58994 TGTATCCT Intron 8 CAGACggcgtggtcagcgtgaagaacag <1-----[58995:59597]-1> tctagcgttcgtgtacctttggt acggcgccccgccgccccgaccg SPP00000035_1.0 252 PLRGFDQ QMSSMVIEHMASHGTRFLR PLR FDQ QM+ +V EHMA HGTR LR PLRAFDQ QMALLVTEHMAGHGTRVLR NIVO01019577.1:59669 cccgtgcGTAACGC Intron 9 CAGcagtcgagcaggcgacgcc ctgctaa<0-----[59690:60795]-0>atctttcaatcgagcgttg ccgcccg agtgtccgcgtccccgcgg SPP00000035_1.0 278 GCAPSRVRRLPDGQLQVTWEDSTTGKEDTGTFDTVLWAI GCAP RV +LP QL+VTW D + ++D GTFDTVLWAI GCAPERVEKLPGQQLRVTWVDLASDRKDAGTFDTVLWAI NIVO01019577.1:60853 gtgcgaggaccgccccgatggcgtgcagggatgagctga ggccagtaatcgaatgtcgtatccagaacgctacttgct ccccgggggcacggccccggctcgcggtgcctccgcgca SPP00000035_1.0 317 RVPDTRSLNLEKAGVDTSPDTQK RVP+T SLNLEKAGV T+P T K G:G[ggc] RVPETASLNLEKAGVRTNPVTGK NIVO01019577.1:60970 GGTAAGGG Intron 10 CAGGCcgcgagacatgagggcaacgaga <1-----[60971:66933]-1> gtcaccgtataacgtgcactcga ataacgtgtgagttgtgccctgg SPP00000035_1.0 341 ILVDSREATSVPHIYAIGDVVE GRPE I VD++EATS+PHIYAIGDV E GRPE IFVDAQEATSIPHIYAIGDVAE GRPE NIVO01019577.1:67005 atgggcggataccatgagggggGTACGGC Intron 11 CAGgccg tttacaaccctcatactgatca<0-----[67071:68095]-0>ggca ccttcgaccccccccccccgag gggg SPP00000035_1.0 367 LTPIAIMAGRLLVQRLFGGSSDLMDYDN LTP AIMAGRLL QRL G +SDLMDY + LTPTAIMAGRLLAQRLSGRTSDLMDYSS NIVO01019577.1:68108 cacagaaggcccgcccagcatgcagtaaGTGAGTG Intron 12 tccccttcggttcagtgggccattaagg<0-----[68192:68570] gacaccgcggcgcgggccgcacggcccc SPP00000035_1.0 395 VPTTVFTPLEYGCVGLSEEEAVARHGQEHVE VPTTVFTPLEYGCVGLSEE AVARHG+EHVE VPTTVFTPLEYGCVGLSEEAAVARHGEEHVE NIVO01019577.1:68568 CAGgcaagtaccgtgtggctggggggccgggcgg -0>tcccttcctaaggtgtcaacctcgagaaata ccgtcctcggtccgggaggacgtctaagcgg SPP00000035_1.0 426 VYHAHYKPLEFTVAGRDASQCYVK VYHA YKPLEFTV RDASQCYVK VYHAFYKPLEFTVPQRDASQCYVK NIVO01019577.1:68664 GTGAGTC Intron 13 CAGgtcgttaccgtagcccggtcttga <0-----[68664:69876]-0>taactaactatctcagaccagata tctgctagggctccggtatgccag SPP00000035_1.0 450 MVCLREPPQLVLGLHFLGPNAGEVTQ MVCLREPPQLVLGLHFLGPNAGEVTQ MVCLREPPQLVLGLHFLGPNAGEVTQ NIVO01019577.1:69949 GTGAGTG Intron 14 CAGagtccgccccgcgcctcgcaggggac <0-----[69949:70017]-0>ttgtgaccatttgtattgcacgatca ggtgggcaggggcgccccccacattg SPP00000035_1.0 476 GFALGI CGASYAQVMRTVGIHPT GFALGI CGAS+ QV+RTVGIHPT GFALGI K:K[aag] CGASFQQVIRTVGIHPT NIVO01019577.1:70096 gtgcgaAAGTGAGTC Intron 15 CAGGtggttccgacaggacca gtctgt <2-----[70116:70756]-2> ggcctaattgctgtacc gtcggc tgcccgggacggccccc SPP00000035_1.0 500 CSEEVVKLRISKRSGLDPTVTGC C+EEV KLRISKRSGLDPTVTGC CAEEVAKLRISKRSGLDPTVTGC NIVO01019577.1:70809 tgggggaccatactgcgcagagt gcaatcatgtcagcgtacctcgg tggggcgccccgcccgccggccc // Making a A in phase 1 intron Making a G in phase 1 intron Making a W in phase 2 intron Making a R in phase 2 intron Making a T in phase 2 intron Making a Y in phase 1 intron Making a G in phase 1 intron Making a K in phase 2 intron >NIVO01019577.1:subseq(189524,120883).pep AGRQRYDLLVIGGGSGGLACAKEAAQLGKKVAVLDYVEPSPRGTRWGLGGTCVNVGCIPK KLMHQAALLGGMIRDAPHYGWRVAQAPHDWATMADAVQNHVKSLNWGHRVQLQDRKVKYL NVKASFVDTHTVCGVSKGGEETLLSAEHIVIATGGRPRYPTHIEGALEYGITSDDLFWLK ESPGKTLVVGASYVALECAGFLTGLGLDTTVMIRSVPLRAFDQQMALLVTEHMAGHGTRV LRGCAPERVEKLPGQQLRVTWVDLASDRKDAGTFDTVLWAIGRVPETASLNLEKAGVRTN PVTGKIFVDAQEATSIPHIYAIGDVAEGRPELTPTAIMAGRLLAQRLSGRTSDLMDYSSV PTTVFTPLEYGCVGLSEEAAVARHGEEHVEVYHAFYKPLEFTVPQRDASQCYVKMVCLRE PPQLVLGLHFLGPNAGEVTQGFALGIKCGASFQQVIRTVGIHPTCAEEVAKLRISKRSGL DPTVTGC // >NIVO01019577.1:subseq(189524,120883).[46680:70877].sp GCAGGCCGGCAACGGTATGACCTCCTGGTGATCGGCGGTGGATCCGGCGGCCTGGCCTGC GCCAAGGAAGCTGCCCAGCTGGGGAAGAAGGTGGCCGTGCTGGACTACGTGGAGCCTTCC CCCCGAGGCACCAGGTGGGGCCTCGGCGGCACCTGCGTGAATGTCGGCTGCATCCCCAAG AAGCTGATGCACCAGGCGGCGCTGCTGGGGGGCATGATCCGCGACGCCCCCCACTACGGC TGGCGCGTGGCCCAGGCCCCACACGACTGGGCAACAATGGCGGATGCCGTCCAGAACCAC GTGAAGTCCCTGAACTGGGGCCACCGCGTCCAGCTGCAGGACAGGAAAGTCAAGTATTTG AACGTCAAGGCCAGCTTTGTCGACACGCACACGGTTTGCGGTGTCTCCAAAGGTGGGGAG GAGACTCTGCTTTCGGCCGAGCACATTGTCATTGCCACCGGAGGTCGGCCGCGGTACCCC ACGCACATCGAAGGTGCCTTGGAATACGGGATCACGAGCGATGACCTCTTCTGGCTGAAG GAATCCCCTGGGAAAACGTTGGTGGTCGGGGCCAGCTACGTAGCCCTGGAGTGCGCGGGC TTCCTCACCGGGCTCGGCTTGGACACCACCGTCATGATACGCAGCGTGCCCCTCCGGGCC TTCGACCAGCAAATGGCTTTGCTTGTCACCGAGCACATGGCTGGCCACGGCACCCGGGTC CTGCGGGGCTGCGCCCCCGAGAGGGTGGAGAAGCTCCCAGGCCAGCAGCTCCGCGTCACC TGGGTGGACCTTGCCTCGGACCGGAAGGATGCGGGCACCTTTGACACCGTGCTCTGGGCC ATAGGCCGAGTTCCAGAAACCGCGAGTCTGAATTTGGAAAAGGCTGGTGTGCGTACGAAC CCCGTCACTGGGAAGATCTTCGTTGATGCCCAGGAAGCCACCTCCATCCCCCACATCTAC GCCATCGGCGACGTGGCAGAGGGGCGGCCGGAGCTGACACCCACAGCCATCATGGCCGGG CGGCTCCTGGCCCAGCGGCTGAGCGGCCGGACCTCAGACCTGATGGACTACAGCAGCGTC CCCACGACTGTCTTCACTCCCCTGGAGTATGGCTGCGTGGGGCTGTCAGAGGAGGCAGCC GTGGCTCGCCATGGAGAAGAGCACGTGGAGGTTTACCATGCGTTCTATAAACCGCTGGAG TTCACTGTCCCCCAGCGGGATGCATCTCAGTGCTACGTAAAGATGGTGTGTCTGCGGGAG CCCCCACAGCTGGTGCTGGGCCTGCACTTCCTCGGCCCCAACGCAGGCGAAGTTACTCAG GGGTTTGCCCTGGGGATCAAGTGTGGGGCCTCCTTCCAGCAGGTGATACGCACGGTGGGC ATCCACCCCACCTGTGCGGAGGAGGTGGCCAAGCTCCGCATCTCCAAGCGCTCCGGCCTG GACCCCACGGTGACCGGCTGC // NIVO01019577.1:subseq(189524,120883) GeneWise match 46680 70877 767.82 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 46680 46749 0.00 + 0 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 46750 50000 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 50001 50057 0.00 + 2 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 50058 50175 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 50176 50317 0.00 + 2 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 50318 50665 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 50666 50740 0.00 + 1 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 50741 51357 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 51358 51436 0.00 + 1 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 51437 51850 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 51851 51913 0.00 + 0 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 51914 52778 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 52779 52849 0.00 + 0 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 52850 58974 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 58975 58994 0.00 + 1 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 58995 59597 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 59598 59689 0.00 + 2 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 59690 60795 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 60796 60970 0.00 + 0 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 60971 66933 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 66934 67070 0.00 + 2 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 67071 68095 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 68096 68191 0.00 + 0 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 68192 68570 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 68571 68663 0.00 + 0 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 68664 69876 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 69877 69948 0.00 + 0 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 69949 70017 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 70018 70115 0.00 + 0 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise intron 70116 70756 0.00 + . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 70757 70877 0.00 + 1 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 // genewise output Score 23.27 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000035_1.0 7 ALRGLGGRFRWRTQAVAGGV-RGAARGAAAGQR A RG G R R+ A GG RG + G AG+R AARGAGRRALARSPAxGGGAGRGGSAGGGAGRR NIVO01019577.-115152 ggcgggccgcgctcgNgggggcggtggggggcc ccggcgggctcgccccgggcggggccgggcggg cgggccgggcgcgccggcggggcccgcccgggc // >NIVO01019577.1:subseq(189524,120883).pep AARGAGRRALARSPAxGGGAGRGGSAGGGAGRR // >NIVO01019577.1:subseq(189524,120883).[115152:115052].sp GCCGCGCGGGGGGCCGGCCGGCGGGCGCTCGCGCGCTCGCCCGCCNCGGGGGGCGGGGCG GGGCGGGGCGGCTCCGCGGGCGGCGGCGCGGGGCGGCGC // NIVO01019577.1:subseq(189524,120883) GeneWise match 115152 115054 23.27 - . NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 NIVO01019577.1:subseq(189524,120883) GeneWise cds 115152 115054 0.00 - 0 NIVO01019577.1:subseq(189524,120883)-genewise-prediction-1 //