------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49769 - 49691
 Found by:  Infernal (score=23.79) Covels (score=18.09)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 1, 0
 Free Energy = -15.98
 Type = 1

         ..(((((((.......((((((((((.(((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         .(((({([(((.....([[[((((((.((((......--.........))))))))))]]]).......-.)))])})))).
 target  CAGAGUGAUGCGUCCAUGAAGUCAUCAGCCCCAAGCC--CCUCGCGGUGGGUGGUGAUGGAACCGUCAA-AGCAGUUUUCUC
                         ****            ^^                        ****                    

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 10989 - 10945
 Found by:  Infernal (score=12.88) Covels (score=5.36)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 1, 0
 Free Energy = -13.62
 Type = 1

         ..(((((((.......((((((((((.(((((................)))))))))))))))........)))))))..
 model   uccgggcaugcgUuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugcccggc
         ----------------([[{((((((.((((..........-----...))))))))))}]])...--------------
 target  ----------------UGAAGGCCUGACCUGUCAAGCUGCU-----UCUCAGGCAGGUCAGAAAUU--------------
                         ****             ^^                        ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 120583 - 120512
 Found by:  Infernal (score=11.93) Covels (score=4.87)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -5.11
 Type = 1

         ..(((((((.......((((((((((((.....................))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         ..((({(((.--....{[[{([((((((...................--))))))])}]]}..--....)))})))..
 target  UUUAUGUAGU--CCCAUGAUGGCUGAUUUUAUGGUACCCAGUUGUUU--GAUCAGACUGAUAC--CAGUCUAGAUGUU
                         ****                                     ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 151163 - 151236
 Found by:  Infernal (score=11.28) Covels (score=12.04)
 Stem2 length = 7   Apical loop length = 21   Insertion in stem2 = 0, 0
 Free Energy = -9.0
 Type = 1

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(({{({((---....([[(((((({{((.....................))}}))))))]])..--..-.))})}})).
 target  CUCAAUGAG---CCUAUGAGCCAUGCCCUGCAAGGCAGUCCAAGAUGAAGAGAUCAUGGUGAAGA--GU-UCUGACAGAA
                         ****           ^^                          ****                 

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 123689 - 123774
 Found by:  Infernal (score=10.14) Covels (score=12.68)
 Stem2 length = 11   Apical loop length = 16   Insertion in stem2 = 0, 1
 Free Energy = -10.8
 Type = 1

         ..(((((((...........(((((((((((((((..................))))))).)))))))).........)))))))..
 model   uucggucaugcg----UuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggcca-ggcCuGAUGuuu-uuucaugaccggc
         ......(((...........{[[(((({((((((((................))))))).)}))))]]}.....-...)))......
 target  UCCCAUGGUCACCUCACUAAUGAAUGGCAGAGCUGAAGCUGAUACCCAGCCCUUGGCUCCUACCAUGAUGCUCU-UCUACCUCAUGA
                             ****                                         ****