genewise output Score 18.97 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000034_1.0 185 SLPYCPGKTLV S P CPGKT V SFPKCPGKTPV NIVO01039896.1:35596 atcatcgaacg gtcagcgacct tccgcgcgaaa // >NIVO01039896.1:subseq(857893,163183).pep SFPKCPGKTPV // >NIVO01039896.1:subseq(857893,163183).[35596:35628].sp AGTTTCCCCAAGTGCCCGGGCAAGACACCAGTA // NIVO01039896.1:subseq(857893,163183) GeneWise match 35596 35628 18.97 + . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 35596 35628 0.00 + 0 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 // genewise output Score 937.47 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000034_1.0 1 MNGPEDLPKSYDYDLIIIGGGSGGLAAAKEA--- MNG +DLP+ YDYDLIIIGGGSGGLAAAK MNGSKDLPEPYDYDLIIIGGGSGGLAAAKARLLV NIVO01039896.1-87380 aagtagccgctgtgcaaagggtggcgggagaccg tagcaatcacaaaattttgggcggtcccacgttt gtccgtcggctcccccctagttaagaccgagctg SPP00000034_1.0 32 QYGKKVMVLDFVTPTPLGTRW +Y KKVMVLDFVTPTPLGTRW A:S[tcc] KYDKKVMVLDFVTPTPLGTRW NIVO01039896.1-87278 TGTCCTGG Intron 1 CAGCCatgaagagcgtgacaccgaat <1-----[87277:87027]-1> aaaaattttattcccctgcgg atcggggtgttctacttatag SPP00000034_1.0 54 LGGTCVNVGCIPKKLMHQAALLG LGGTCVNVGCIPKKLMHQAALLG G:G[ggt] LGGTCVNVGCIPKKLMHQAALLG NIVO01039896.1-86961 GGTAAGCT Intron 2 CAGGTcggatgaggtacaacaccggttg <1-----[86960:84561]-1> tggcgtatggtcaattaaccttg taagtgtgtcataaggcaaggaa SPP00000034_1.0 78 QALQDSRNYGWKVEET KHDWDRM QAL+DSRNYGW VEET KHDW+RM QALRDSRNYGWNVEET V:V[gtt] KHDWERM NIVO01039896.1-84489 cgccgtcatgtagggaGGTACGTG Intron 3 CAGTTacgtgaa actgacgaaggataac <1-----[84440:75769]-1> aaagagt acaactaccggccgga gtcggag SPP00000034_1.0 102 IEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIK EAVQNHIGSLNWGYRVALREKKV YEN+YG+F+GPHRIK TEAVQNHIGSLNWGYRVALREKKVTYENSYGEFVGPHRIK NIVO01039896.1-75745 agggcacagtcatgtcggccgaagatgattggtggccaaa cactaaatgctaggagtctgaaatcaaacagattgcagta aggcgcctctccgcccgcgggagcccgcgcggtggtcgtg SPP00000034_1.0 142 ATNNKGKEKIYSAERFLIATGERPRY ATNNKGKEKIYSAERFLIATGERPRY ATNNKGKEKIYSAERFLIATGERPRY NIVO01039896.1-75625 GTAAGTG Intron 4 TAGgaaaagagaattggatcagaggacct <0-----[75625:75240]-0>ccaaagaaataccagtttccgagcga aattacaggtcaagatctcttaggtt SPP00000034_1.0 168 LGIPGDKEYCIS DDLFSLPYCPG LGIPGDKEYCIS DDLFSLPYCPG LGIPGDKEYCIS S:S[agt] DDLFSLPYCPG NIVO01039896.1-75161 tgacggagttaaAGGTAAGGA Intron 5 CAGTggctttcttcg tgtcgaaaagtg <2-----[75123:73477]-2> aattctcagcg gtcttcaactcc tttctattcgt SPP00000034_1.0 192 KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHM KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHM KTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHM NIVO01039896.1-73442 aacggggttggtgtggtcggagtggagagctaccagtgcgagaaaggca actttgccatctagcgttcgtgtatctttgctttggtaaatcaatgaat gcggcaactttgattattttttaccttgaactcaaatcgcgccattatg SPP00000034_1.0 241 EEHGIKFIRQFVPIK VEQIEAGTPGR +EHGIKFIR+FVPIK VEQIEAGTPGR QEHGIKFIREFVPIK VEQIEAGTPGR NIVO01039896.1-73295 cgcgaataagtgcaaGTAAGTG Intron 6 TAGggcagggacgc aaagtattgattcta<0-----[73250:71576]-0>taatacgccgg aattcgcaagtaaag taataagaaca SPP00000034_1.0 267 LRVVAQSTNSEEIIEGEYNT VMLAIG LRVVA+STN ++ IEGEYNT V+LAIG LRVVAKSTNGDQTIEGEYNT VLLAIG NIVO01039896.1-71542 cagggataaggcaagggtaaGTAAGGA Intron 7 CAGgtcgag tgttcaccagaactagaaac<0-----[71482:70909]-0>tttctg gagatgctttcaccaagttg aggaat SPP00000034_1.0 293 RDACTRKIGLETVGVKINE TGKI RDACTRKIGLE VGVKINE TGKI RDACTRKIGLENVGVKINE K:K[aag] TGKI NIVO01039896.1-70890 aggtaaaagtgagggaaagAAGTAAGAA Intron 8 CAGGagaa gacgcgatgtaatgtataa <2-----[70831:69340]-2> cgat attcgaatcaacgaagata taaa SPP00000034_1.0 317 PVTDEEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAGSTVK PVT+EEQTNVPYIYAIGDILE K+ELTPVAIQAGRLLAQRLY GSTVK PVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLYGGSTVK NIVO01039896.1-69326 cgagggcaagctatgaggatggacgcacggacggaccgcattggtaga ctcaaaacatcatactgattagatatcctctacggttcagtaggccta tcagaggccgtcctccttaagggggcccgccgaagggtgggttccccg SPP00000034_1.0 365 CDYENVPTTVFTPLEYGACGLSEEKA CDYENVPTTVFTPLEYG+CGLSEEKA CDYENVPTTVFTPLEYGSCGLSEEKA NIVO01039896.1-69182 GTGAGTG Intron 9 CAGtgtgagcaagtactgtgttgctggag <0-----[69182:62430]-0>gaaaatcccttcctaagcggtcaaac cctactggttcttgatgtttttggat SPP00000034_1.0 391 VEKFGEENIE VYHSYFWPLEWTIPSR VEKFGEEN+E VYHSYFWPLEWTIPSR VEKFGEENVE VYHSYFWPLEWTIPSR NIVO01039896.1-62351 ggatgggaggGTAAGTT Intron 10 TAGgtcatttctgtaacta taatgaaata<0-----[62321:59940]-0>taagatgctagctccg ggatgaattg tcttctgagaggtgaa SPP00000034_1.0 417 DNNKCYAKIICNTKDN ERVVGFHVLG DNNKCYAK++CN KDN ERVVGFH+LG DNNKCYAKVVCNIKDN ERVVGFHILG NIVO01039896.1-59891 gaaattgaggtaaagaGTAAGTG Intron 11 TAGgcgggtcacg aaaagacattgataaa<0-----[59843:55785]-0>agttgtattg tccattaaacctcact attgcccagt SPP00000034_1.0 443 PNAGEVTQGFAAALKCGLTKKQLDSTIGIHPVCAE PNAGEVTQGFAAALKCGLTK QLDSTIGIHPVCAE PNAGEVTQGFAAALKCGLTKDQLDSTIGIHPVCAE NIVO01039896.1-55754 caggggacgtgggcatgcaagccgaaagaccgtgg cacgatcagtccctaggtcaaatagctgtactgca attaggcggcaaacatggcgcggccccgcctttag SPP00000034_1.0 478 VFTTLSVTKRSGASILQAGC VFTTLSVTKRSG +ILQ GC VFTTLSVTKRSGGNILQTGC NIVO01039896.1-55649 GTGCGTC Intron 12 CAGgtaactgaactggaaccagt <0-----[55649:50066]-0>ttcctctcagcggattacgg gcgtgggcgccgacccgctc // Making a S in phase 1 intron Making a G in phase 1 intron Making a V in phase 1 intron Making a S in phase 2 intron Making a K in phase 2 intron >NIVO01039896.1:subseq(857893,163183).pep MNGSKDLPEPYDYDLIIIGGGSGGLAAAKARLLVSKYDKKVMVLDFVTPTPLGTRWGLGG TCVNVGCIPKKLMHQAALLGQALRDSRNYGWNVEETVKHDWERMTEAVQNHIGSLNWGYR VALREKKVTYENSYGEFVGPHRIKATNNKGKEKIYSAERFLIATGERPRYLGIPGDKEYC ISSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIG EHMQEHGIKFIREFVPIKVEQIEAGTPGRLRVVAKSTNGDQTIEGEYNTVLLAIGRDACT RKIGLENVGVKINEKTGKIPVTEEEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRL YGGSTVKCDYENVPTTVFTPLEYGSCGLSEEKAVEKFGEENVEVYHSYFWPLEWTIPSRD NNKCYAKVVCNIKDNERVVGFHILGPNAGEVTQGFAAALKCGLTKDQLDSTIGIHPVCAE VFTTLSVTKRSGGNILQTGC // >NIVO01039896.1:subseq(857893,163183).[87380:50004].sp ATGAATGGCTCCAAGGATCTCCCGGAGCCCTATGACTACGACCTCATCATCATTGGAGGG GGTTCTGGAGGACTGGCAGCCGCCAAGGCAAGGCTCCTTGTGTCCAAATATGACAAGAAG GTGATGGTTCTGGATTTTGTCACTCCAACCCCTCTTGGAACTAGATGGGGTCTTGGAGGA ACGTGTGTGAATGTGGGTTGCATACCTAAAAAACTGATGCACCAAGCAGCGTTGTTAGGA CAAGCCCTACGAGACTCTCGAAACTACGGGTGGAACGTCGAGGAGACAGTTAAGCATGAC TGGGAGAGAATGACAGAGGCGGTCCAGAACCACATTGGCTCTCTCAACTGGGGCTACCGC GTGGCCCTGCGGGAGAAAAAGGTCACCTACGAGAACTCGTACGGGGAGTTTGTGGGGCCT CACAGGATTAAGGCAACAAATAATAAAGGCAAAGAGAAGATTTACTCAGCAGAGAGATTT CTCATTGCCACTGGTGAAAGGCCGCGTTATTTGGGTATCCCTGGTGACAAAGAATACTGT ATCAGCAGTGATGATCTTTTCTCTTTACCTTATTGCCCGGGTAAGACCCTGGTGGTCGGA GCATCCTATGTTGCTTTGGAATGTGCTGGATTTCTTGCTGGTATTGGTTTAGACGTCACT GTTATGGTACGATCCATTCTCCTAAGAGGATTTGACCAGGACATGGCCAACAAAATTGGT GAACATATGCAAGAACATGGTATCAAGTTCATAAGAGAGTTTGTACCAATAAAGGTTGAA CAAATTGAAGCAGGGACACCAGGCCGACTGAGAGTGGTAGCTAAGTCCACTAATGGTGAC CAAACCATCGAAGGAGAGTATAATACGGTATTGCTGGCAATAGGTAGAGATGCTTGCACG AGAAAAATTGGCTTAGAAAACGTGGGAGTAAAGATAAATGAAAAGACTGGAAAAATACCT GTCACAGAGGAAGAGCAGACCAACGTGCCTTACATCTATGCCATCGGTGATATATTAGAG GGGAAGCTGGAGCTCACCCCCGTGGCCATCCAGGCAGGAAGGCTGCTGGCTCAGAGGTTG TATGGTGGCTCCACCGTCAAGTGCGACTATGAAAACGTTCCGACGACTGTTTTCACTCCT TTGGAATATGGGTCTTGTGGTCTTTCTGAGGAGAAAGCTGTGGAGAAATTTGGGGAAGAA AATGTTGAGGTTTACCATAGTTACTTTTGGCCATTGGAATGGACGATTCCGTCAAGAGAT AACAACAAATGTTATGCAAAAGTAGTCTGCAATATCAAAGACAATGAACGTGTTGTGGGC TTCCACATACTGGGTCCAAATGCTGGAGAGGTGACCCAGGGGTTCGCAGCAGCACTCAAA TGTGGGCTGACCAAGGACCAGCTGGACAGCACCATCGGGATCCACCCTGTTTGTGCAGAG GTGTTCACGACTCTGTCGGTGACCAAGCGCTCCGGGGGAAACATCCTCCAGACCGGTTGC // NIVO01039896.1:subseq(857893,163183) GeneWise match 87380 50006 939.47 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 87380 87278 0.00 - 0 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 87277 87027 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 87026 86961 0.00 - 2 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 86960 84561 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 84560 84441 0.00 - 2 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 84440 75769 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 75768 75626 0.00 - 2 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 75625 75240 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 75239 75124 0.00 - 0 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 75123 73477 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 73476 73251 0.00 - 1 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 73250 71576 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 71575 71483 0.00 - 0 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 71482 70909 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 70908 70832 0.00 - 0 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 70831 69340 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 69339 69183 0.00 - 1 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 69182 62430 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 62429 62322 0.00 - 0 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 62321 59940 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 59939 59844 0.00 - 0 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 59843 55785 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 55784 55650 0.00 - 0 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise intron 55649 50066 0.00 - . NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 NIVO01039896.1:subseq(857893,163183) GeneWise cds 50065 50006 0.00 - 0 NIVO01039896.1:subseq(857893,163183)-genewise-prediction-1 //