genewise output Score 206.16 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000031_1.0 1 MSGEPGQTSVAPPPEEVEPGSGVRIVVEY MSG+ G T+VAPPP E EPG GVRIVVEY MSGDTGTTAVAPPPGETEPGHGVRIVVEY NIVO01065774.1:50000 aaggagaagggcccggagcgcggcagggt tggacgccctccccgacacgagtgtttaa gcgtggggcagctcggcagctgcctgtgc SPP00000031_1.0 30 EPCGFEATYLELASAVKEQYPGI EPCGFEATYLELASAVKEQYPGI C:C[tgc] EPCGFEATYLELASAVKEQYPGI NIVO01065774.1:50087 TGGTGAGCG Intron 1 TAGCgctgtggatcgcgaggagctcga <2-----[50089:50192]-2> acggtaccatatcgctaaaacgt accccagccggggtcggggtacc SPP00000031_1.0 54 EIESRLGGT AFEIEINGQLVFSK EIESRLGGT AFEIEINGQLVFSK EIESRLGGT G:G[ggg] AFEIEINGQLVFSK NIVO01065774.1:50263 gagtccggaGGTGAGGC Intron 2 TAGGGgtgagaagccgtta atacgtggc <1-----[50291:50724]-1> ctatatagatttca gcggcggca ctgtactagggtcg SPP00000031_1.0 78 LENGGFPYEKD LIEAIRRASNGETLE LENGGFPYEKD LIEAIRRASNGE LE LENGGFPYEKD LIEAIRRASNGEPLE NIVO01065774.1:50769 cgaggtctgagGTGAGTA Intron 3 TAGcaggacagaaggccg taaggtcaaaa<0-----[50802:50888]-0>ttactggcgagacta ggtgctttgat ctgtcaactcaacca SPP00000031_1.0 104 KITNSRPPCVIL KITNSRPPCVIL KITNSRPPCVIL NIVO01065774.1:50934 aaaaaccctgac atcaggccgttt gccccctttccg // Making a C in phase 2 intron Making a G in phase 1 intron >NIVO01065774.1:subseq(5351082,100969).pep MSGDTGTTAVAPPPGETEPGHGVRIVVEYCEPCGFEATYLELASAVKEQYPGIEIESRLG GTGAFEIEINGQLVFSKLENGGFPYEKDLIEAIRRASNGEPLEKITNSRPPCVIL // >NIVO01065774.1:subseq(5351082,100969).[50000:50969].sp ATGAGCGGGGATACGGGGACGACGGCCGTAGCGCCCCCTCCCGGGGAGACCGAACCGGGC CATGGGGTCCGCATTGTGGTTGAGTACTGCGAACCCTGCGGCTTCGAAGCGACCTACCTG GAGCTGGCGAGTGCCGTGAAGGAGCAGTATCCAGGCATCGAGATCGAGTCGCGCCTGGGG GGCACAGGGGCCTTTGAGATTGAAATCAATGGACAGCTGGTGTTTTCCAAGCTGGAGAAT GGGGGCTTTCCTTATGAGAAAGATCTCATTGAGGCTATCCGAAGAGCCAGTAACGGAGAA CCCCTCGAAAAGATCACCAACAGCCGCCCTCCTTGTGTCATCCTG // NIVO01065774.1:subseq(5351082,100969) GeneWise match 50000 50969 206.16 + . NIVO01065774.1:subseq(5351082,100969)-genewise-prediction-1 NIVO01065774.1:subseq(5351082,100969) GeneWise cds 50000 50088 0.00 + 0 NIVO01065774.1:subseq(5351082,100969)-genewise-prediction-1 NIVO01065774.1:subseq(5351082,100969) GeneWise intron 50089 50192 0.00 + . NIVO01065774.1:subseq(5351082,100969)-genewise-prediction-1 NIVO01065774.1:subseq(5351082,100969) GeneWise cds 50193 50290 0.00 + 1 NIVO01065774.1:subseq(5351082,100969)-genewise-prediction-1 NIVO01065774.1:subseq(5351082,100969) GeneWise intron 50291 50724 0.00 + . NIVO01065774.1:subseq(5351082,100969)-genewise-prediction-1 NIVO01065774.1:subseq(5351082,100969) GeneWise cds 50725 50801 0.00 + 2 NIVO01065774.1:subseq(5351082,100969)-genewise-prediction-1 NIVO01065774.1:subseq(5351082,100969) GeneWise intron 50802 50888 0.00 + . NIVO01065774.1:subseq(5351082,100969)-genewise-prediction-1 NIVO01065774.1:subseq(5351082,100969) GeneWise cds 50889 50969 0.00 + 0 NIVO01065774.1:subseq(5351082,100969)-genewise-prediction-1 // genewise output Score 20.59 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000031_1.0 84 PYEKDLIEAIRRASNGETLEKITNSRPPCVIL P ++I+ IR + + ++ N+ PC++L PPPPEVIDTIRDRGQAQPISRVVNTVLPCLVL NIVO01065774.1-31296 ccccggagaaagagcgccatcggaagcctcgc ccccattactgaggacactcgttacttcgttt cgctgcatatgcatgtgccaaggcactcctct // >NIVO01065774.1:subseq(5351082,100969).pep PPPPEVIDTIRDRGQAQPISRVVNTVLPCLVL // >NIVO01065774.1:subseq(5351082,100969).[31296:31199].sp CCCCCGCCCCCTGAGGTCATAGATACAATTAGGGACAGAGGTCAGGCTCAGCCCATCTCA CGAGTGGTGAACACAGTCCTTCCCTGCCTTGTCCTT // NIVO01065774.1:subseq(5351082,100969) GeneWise match 31296 31201 20.59 - . NIVO01065774.1:subseq(5351082,100969)-genewise-prediction-1 NIVO01065774.1:subseq(5351082,100969) GeneWise cds 31296 31201 0.00 - 0 NIVO01065774.1:subseq(5351082,100969)-genewise-prediction-1 //