Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../SelW2-human.fa -t SelW2-NIVO01065774.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000031_1.0 # Protein # Selenoprotein W2 (SelW2) # Homo sapiens # Complete
        Target: NIVO01065774.1:subseq(5351082,100969) Ammotragus lervia isolate NAZ scaffold723_len7401458_cov71, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 528
   Query range: 0 -> 115
  Target range: 49999 -> 50969

     1 : MetSerGlyGluProGlyGlnThrSerValAlaProProProGluGluValGluProGly :    20
         |||||||||!!: !!|||  !|||:!!|||||||||||||||! !|||..!|||||||||
         MetSerGlyAspThrGlyThrThrAlaValAlaProProProGlyGluThrGluProGly
 50000 : ATGAGCGGGGATACGGGGACGACGGCCGTAGCGCCCCCTCCCGGGGAGACCGAACCGGGC : 50057

    21 : SerGlyValArgIleValValGluTyr{Cy}  >>>> Target Intron 1 >>>>   :    30
           !||||||||||||||||||||||||{||}            104 bp           
         HisGlyValArgIleValValGluTyr{Cy}++                         ++
 50058 : CATGGGGTCCGCATTGTGGTTGAGTAC{TG}gt.........................ag : 50191

    31 : {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGln :    49
         {|}|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         {s}GluProCysGlyPheGluAlaThrTyrLeuGluLeuAlaSerAlaValLysGluGln
 50192 : {C}GAACCCTGCGGCTTCGAAGCGACCTACCTGGAGCTGGCGAGTGCCGTGAAGGAGCAG : 50248

    50 : TyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}  >>>> Target Intr :    63
         |||||||||||||||||||||||||||||||||||||||{|}            434 bp
         TyrProGlyIleGluIleGluSerArgLeuGlyGlyThr{G}++                
 50249 : TATCCAGGCATCGAGATCGAGTCGCGCCTGGGGGGCACA{G}gt................ : 50293

    64 : on 2 >>>>  {ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu :    78
                    {||}|||||||||||||||||||||||||||||||||||||||||||||
                  ++{ly}AlaPheGluIleGluIleAsnGlyGlnLeuValPheSerLysLeu
 50294 : .........ag{GG}GCCTTTGAGATTGAAATCAATGGACAGCTGGTGTTTTCCAAGCTG : 50769

    79 : GluAsnGlyGlyPheProTyrGluLysAsp  >>>> Target Intron 3 >>>>  L :    89
         ||||||||||||||||||||||||||||||            87 bp            |
         GluAsnGlyGlyPheProTyrGluLysAsp++                         ++L
 50770 : GAGAATGGGGGCTTTCCTTATGAGAAAGATgt.........................agC : 50889

    90 : euIleGluAlaIleArgArgAlaSerAsnGlyGluThrLeuGluLysIleThrAsnSerA :   109
         ||||||||||||||||||||||||||||||||||| !!||||||||||||||||||||||
         euIleGluAlaIleArgArgAlaSerAsnGlyGluProLeuGluLysIleThrAsnSerA
 50890 : TCATTGAGGCTATCCGAAGAGCCAGTAACGGAGAACCCCTCGAAAAGATCACCAACAGCC : 50949

   110 : rgProProCysValIleLeu :   115
         ||||||||||||||||||||
         rgProProCysValIleLeu
 50950 : GCCCTCCTTGTGTCATCCTG : 50969

vulgar: SPP00000031_1.0 0 115 . NIVO01065774.1:subseq(5351082,100969) 49999 50969 + 528 M 29 87 S 0 2 5 0 2 I 0 100 3 0 2 S 1 1 M 32 96 S 0 1 5 0 2 I 0 430 3 0 2 S 1 2 M 25 75 5 0 2 I 0 83 3 0 2 M 27 81
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-18
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	gene	50000	50969	528	+	.	gene_id 1 ; sequence SPP00000031_1.0 ; gene_orientation +
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	cds	50000	50088	.	+	.	
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	exon	50000	50088	.	+	.	insertions 0 ; deletions 0
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	splice5	50089	50090	.	+	.	intron_id 1 ; splice_site "GT"
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	intron	50089	50192	.	+	.	intron_id 1
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	splice3	50191	50192	.	+	.	intron_id 0 ; splice_site "AG"
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	cds	50193	50290	.	+	.	
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	exon	50193	50290	.	+	.	insertions 0 ; deletions 0
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	splice5	50291	50292	.	+	.	intron_id 2 ; splice_site "GT"
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	intron	50291	50724	.	+	.	intron_id 2
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	splice3	50723	50724	.	+	.	intron_id 1 ; splice_site "AG"
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	cds	50725	50801	.	+	.	
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	exon	50725	50801	.	+	.	insertions 0 ; deletions 0
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	splice5	50802	50803	.	+	.	intron_id 3 ; splice_site "GT"
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	intron	50802	50888	.	+	.	intron_id 3
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	splice3	50887	50888	.	+	.	intron_id 2 ; splice_site "AG"
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	cds	50889	50969	.	+	.	
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	exon	50889	50969	.	+	.	insertions 0 ; deletions 0
NIVO01065774.1:subseq(5351082,100969)	exonerate:protein2genome:local	similarity	50000	50969	528	+	.	alignment_id 1 ; Query SPP00000031_1.0 ; Align 50000 1 87 ; Align 50194 31 96 ; Align 50727 64 75 ; Align 50889 89 81
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis