_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-09
 Query name: gi|984121466|ref|XP_015352472.1| PREDICTED: selenoprotein W, partial [Marmota marmota marmota]
 Query range: 58-147  (total 148)

 Target: /data/www-rg/seblastian_results/786465228/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  49562        49630
 -Exon 2  49749        49802
 -Exon 3  50000        50074
 -Exon 4  50178        50252

 Redox box: no

Query   SACPGTPHL-DSPTSGAUGYKPK <---Intron---> YLQLKKKLEDEFPGCLDI <---Intron---> CGEGTPQVTGFFEVMVAGKLVHSKK <
        |/ |||  |  /||||||||||| <   118bp    > |||||||||||||  ||| <   197bp    > |||||||||||||| |||||||||| <
Target  SSSPGTHSLGHAPTSGAUGYKPK                YLQLKKKLEDEFPSRLDI                CGEGTPQVTGFFEVFVAGKLVHSKK  
        tttcgactcgcgcaaggtgtaca                tcccaaatgggtcactga                tgggaccgagttggtgggacgctaa  
        ccccgcactgacccggcggaaca                atataaataaatcggtat                ggagccatcgttatttcgattacaa  
        cctcgccttactcctctaccgcg                ttgcgggaatgctctgcc                ccggtcgctcctagcagaggtccgg  
                         *                                                                                  

Query   ---Intron---> RGDGYVDTESKFLKLVAAIKATLAQ
           103bp    >  |||||||||||||||||||| |||
Target                GGDGYVDTESKFLKLVAAIKAALAQ
                      ggggtggagaatcacgggaaggtgc
                      ggagatacagattattcctacctca
                      actccgcagcgtggggcccactgtg
                                               
 Sequence until next stop: 
GCCTGA
 A  * 

 Distance CDS-SECIS: 1189 ; UGA-SECIS: 1408

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 51442 - 51520
 Found by:  Infernal (score=31.75) Covels (score=35.77)
 Stem2 length = 10   Apical loop length = 18   Insertion in stem2 = 0, 0
 Free Energy = -18.13
 Type = 1

         ..(((((((.......(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((([(........{[[{{((((((((((..................))))))))))}}]]}..--.....)]))))..
 target  CUCGGCAGACGCUUCAUGACAGGAAGGACUGAAAUGUCUCUUGGACGCCUGGUCCUUCCCUGAUGU--UCUCACGGCCGCC
                         ****           ^^^                          ****