Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../SelW1-human.fa -t SelW1-NIVO01052466.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000030_1.0 # Protein # Selenoprotein W1 (SelW1) # Homo sapiens # Complete
        Target: NIVO01052466.1:subseq(313146,99990) Ammotragus lervia isolate NAZ scaffold1993_len412315_cov72, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 369
   Query range: 0 -> 86
  Target range: 47816 -> 50252

     1 : MetAlaLeuAlaValArgValValTyr{Cy}  >>>> Target Intron 1 >>>>   :    10
         ||||||:!!!.!|||||||||||||||{||}           1760 bp           
         MetAlaValValValArgValValTyr{Cy}++                         ++
 47817 : ATGGCGGTCGTCGTCCGAGTGGTTTAT{TG}gt.........................ag : 49604

    11 : {s}GlyAlaUnkGlyTyrLysSerLys  >>>> Target Intron 2 >>>>  TyrL :    20
         {|}||||||   ||||||||| !!|||            118 bp           ||||
         {s}GlyAla***GlyTyrLysProLys++                         ++TyrL
 49605 : {T}GGCGCTTGAGGCTACAAGCCCAAGgt.........................agTATC : 49752

    21 : euGlnLeuLysLysLysLeuGluAspGluPheProGlyArgLeuAspIle  >>>> Tar :    37
         |||||||||||||||||||||||||||||||||||.!!||||||||||||          
         euGlnLeuLysLysLysLeuGluAspGluPheProSerArgLeuAspIle++        
 49753 : TTCAGCTCAAGAAGAAGTTAGAAGATGAGTTCCCTAGCCGTTTGGACATCgt........ : 49805

    38 : get Intron 3 >>>>  CysGlyGluGlyThrProGlnAlaThrGlyPhePheGluVa :    50
           197 bp           |||||||||||||||||||||!.!|||||||||||||||||
                          ++CysGlyGluGlyThrProGlnValThrGlyPhePheGluVa
 49806 : .................agTGCGGCGAGGGGACTCCCCAGGTCACTGGCTTCTTTGAAGT : 50039

    51 : lMetValAlaGlyLysLeuIleHisSerLysLys  >>>> Target Intron 4 >>> :    62
         |.!.|||||||||||||||:!!||||||||||||            103 bp        
         lPheValAlaGlyLysLeuValHisSerLysLys++                        
 50040 : GTTCGTAGCGGGAAAGCTGGTTCACTCCAAGAAGgt........................ : 50077

    63 : >  LysGlyAspGlyTyrValAspThrGluSerLysPheLeuLysLeuValAlaAlaIle :    80
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||
          ++GlyGlyAspGlyTyrValAspThrGluSerLysPheLeuLysLeuValAlaAlaIle
 50078 : .agggaggcgATGGCTACGTGGACACAGAGAGCAAGTTTCTGAAGCTGGTGGCCGCCATC : 50232

    81 : LysAlaAlaLeuAlaGln :    86
         ||||||||||||||||||
         LysAlaAlaLeuAlaGln
 50233 : AAAGCCGCTTTGGCTCAG : 50252

vulgar: SPP00000030_1.0 0 86 . NIVO01052466.1:subseq(313146,99990) 47816 50252 + 369 M 9 27 S 0 2 5 0 2 I 0 1756 3 0 2 S 1 1 M 8 24 5 0 2 I 0 114 3 0 2 M 18 54 5 0 2 I 0 193 3 0 2 M 25 75 5 0 2 I 0 99 3 0 2 M 25 75
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	gene	47817	50252	369	+	.	gene_id 1 ; sequence SPP00000030_1.0 ; gene_orientation +
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	cds	47817	47845	.	+	.	
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	exon	47817	47845	.	+	.	insertions 0 ; deletions 0
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	splice5	47846	47847	.	+	.	intron_id 1 ; splice_site "GT"
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	intron	47846	49605	.	+	.	intron_id 1
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	splice3	49604	49605	.	+	.	intron_id 0 ; splice_site "AG"
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	cds	49606	49630	.	+	.	
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	exon	49606	49630	.	+	.	insertions 0 ; deletions 0
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	splice5	49631	49632	.	+	.	intron_id 2 ; splice_site "GT"
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	intron	49631	49748	.	+	.	intron_id 2
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	splice3	49747	49748	.	+	.	intron_id 1 ; splice_site "AG"
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	cds	49749	49802	.	+	.	
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	exon	49749	49802	.	+	.	insertions 0 ; deletions 0
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	splice5	49803	49804	.	+	.	intron_id 3 ; splice_site "GT"
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	intron	49803	49999	.	+	.	intron_id 3
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	splice3	49998	49999	.	+	.	intron_id 2 ; splice_site "AG"
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	cds	50000	50074	.	+	.	
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	exon	50000	50074	.	+	.	insertions 0 ; deletions 0
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	splice5	50075	50076	.	+	.	intron_id 4 ; splice_site "GT"
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	intron	50075	50177	.	+	.	intron_id 4
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	splice3	50176	50177	.	+	.	intron_id 3 ; splice_site "ag"
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	cds	50178	50252	.	+	.	
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	exon	50178	50252	.	+	.	insertions 0 ; deletions 0
NIVO01052466.1:subseq(313146,99990)	exonerate:protein2genome:local	similarity	47817	50252	369	+	.	alignment_id 1 ; Query SPP00000030_1.0 ; Align 47817 1 27 ; Align 49607 11 24 ; Align 49749 19 54 ; Align 50000 37 75 ; Align 50178 62 75
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis