genewise output Score 216.44 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000029_1.0 7 TPAPSSA--RTSTSVRASTPTRTPTPLRTPTPVRTRTPIRTLTPVLTPS TP P S RT T V STP RTPTP RTPTPV TP+RT TPV + TPVPPSTPFRTPTPVPPSTPFRTPTPFRTPTPVPPSTPFRTPTPVPPST NIVO01013187.1:47598 acgcctactcacacgcctactcacactcacacgcctactcacacgccta cctccccctgcccctccccctgcccctgcccctccccctgcccctcccc tgcgcatgcgcatgcgcatgcgcatacgcatgcgcatgcgcatgcgcat SPP00000029_1.0 54 PAGT-SPLVL-TPAPAQIPTLVPTPALARIPRLVPPPAPAWIPTPVPTP P T P+ L TP P P PTP P V PP P PTPV P PVRTPTPVPLSTPVPPSTPVRTPTPVPLSTP--VRPPTPVRPPTPVRPP NIVO01013187.1:47745 cgcacacgcctacgcctacgcacacgcctac gcccacgcccacgccc ctgcccctctccctccccctgcccctctccc tgcccctgcccctgcc gcccatgcgcgtgcgcatgcccatgcgcgtg cgcgtccccgtccgtg SPP00000029_1.0 101 VPVRNPTPVPTPARTLTP-PVRVPAPAPAQLLAGIRAALPVLDSYLAPA PVR PTP+ TP +P PV++P P P R +P L+S + TPVRIPTPIGTPTLIQSPTPVQIPIPDPIPTPIPSRVLIPALESLPDSS NIVO01013187.1:47886 acgcacacagacacactcacgcacacgcacacactcgcacgtgtccgtt cctgtccctgcccttacccctatctcactccctccgtttcctactcacc ttcgagagcgcaagcgcgtgcacatgcgcacgcatgcgttcgacctcgt SPP00000029_1.0 149 LPLDPPPEPAPELPLLPEEDPEPAPSLKLIPSVSSEAGPAPGPLPTRTP LP PP E P L + P ++ EP+P +K + S +S P PLP TP LPSGPPLELEPTLTVSPAKNLEPSPRVKQVSSATSGFPPIQEPLPALTP NIVO01013187.1:48033 cctgcccgcgcacagtcgaacgcacagacgttgaagtccacgcccgcac tccgcctatacctctcccaatacgcgtaatccccggtcctaactcctcc gtgcgcgatacgctgatcgttgacggggataacctattccagcttttta SPP00000029_1.0 198 LAANSPGPTLDFTFRADPSAIGLADPPIPSPVPSPILGTIPSAISLQNC LA + P+ +R DPS L +PILG I + + + LATDLRSPSRGSPLRTDPSTTKLIASSSGHVPGTPILGAIQAILPVP-- NIVO01013187.1:48180 tgagtctctcgtccaagctaaatagtttgcgcgacacggacgatcgc tccatgcccggcctgcaccccattccccgatcgccttgctacttctc gcctggcaccgctggacagccggattttatcaggccagccgccagtt SPP00000029_1.0 247 TETFPSSSENFALDKRVLIRVTY + S S N+ + ++++RV Y ATALASISGNLKAENKIMVRVVY C:C[tgc] NIVO01013187.1:48321 gagtgtaagacaggaaaagcggtTGGTAAAGA Intron 1 AAGC ccctcctggatacaaatttgtta <2-----[48392:49858]-2> ccaaccctgccagacgcgtagtc SPP00000029_1.0 271 GLXSYSLR YILLKKSLEQQFPNHLLF YSLR YILL+KSLEQQFPN L+F ----YSLR YILLRKSLEQQFPNSLIF NIVO01013187.1:49860 taccGTAAGTA Intron 2 CAGtaccaaacgcctcatcat agtg<0-----[49872:50002]-0>atttgagtaaatcacttt ccgg ccagagtgggatactacc SPP00000029_1.0 297 EEDRAAQATGEFEVFVNGRLVHSKK EE+ +AQATGEFEVFV+G+L+HSKK EEEISAQATGEFEVFVDGKLIHSKK NIVO01013187.1:50057 GTGAGTG Intron 3 CAGgggatgcgaggtggtgggacactaa <0-----[50057:50166]-0>aaatccaccgatatttagattacaa gaaatcgtaggtagtgtgagatagg SPP00000029_1.0 322 RGDGFVNESRLQKIVSVIDEEIKKR GDGFV+E++LQ IV++++EE+KKR NGDGFVDEAKLQTIVNLLNEEFKKR NIVO01013187.1:50242 GTGATTC Intron 4 CAGagggtggggaccaagaccaggtaaa <0-----[50242:50340]-0>agagttaacatacttattaaataag tttctgtgcgagatgcgctggcgag // Making a C in phase 2 intron >NIVO01013187.1:subseq(340976,100415).pep TPVPPSTPFRTPTPVPPSTPFRTPTPFRTPTPVPPSTPFRTPTPVPPSTPVRTPTPVPLS TPVPPSTPVRTPTPVPLSTPVRPPTPVRPPTPVRPPTPVRIPTPIGTPTLIQSPTPVQIP IPDPIPTPIPSRVLIPALESLPDSSLPSGPPLELEPTLTVSPAKNLEPSPRVKQVSSATS GFPPIQEPLPALTPLATDLRSPSRGSPLRTDPSTTKLIASSSGHVPGTPILGAIQAILPV PATALASISGNLKAENKIMVRVVYCYSLRYILLRKSLEQQFPNSLIFEEEISAQATGEFE VFVDGKLIHSKKNGDGFVDEAKLQTIVNLLNEEFKKR // >NIVO01013187.1:subseq(340976,100415).[47598:50415].sp ACTCCGGTCCCGCCCTCAACTCCGTTCCGGACCCCAACTCCGGTCCCGCCCTCAACTCCG TTCCGGACCCCAACTCCATTCCGGACCCCAACTCCGGTCCCGCCCTCAACTCCGTTCCGG ACCCCAACTCCGGTCCCGCCCTCAACTCCGGTCCGCACCCCAACTCCGGTCCCGCTCTCG ACTCCGGTCCCGCCCTCAACTCCGGTCCGCACCCCAACTCCGGTCCCGCTCTCGACTCCG GTCCGGCCCCCGACTCCCGTCCGCCCCCCGACTCCCGTCCGGCCTCCGACTCCTGTCCGG ATACCGACACCGATCGGGACCCCAACACTGATCCAGTCCCCGACTCCGGTCCAAATCCCA ATTCCGGACCCGATCCCAACCCCGATCCCATCTCGGGTCCTGATTCCTGCCTTGGAATCC CTCCCTGACTCGTCTCTGCCTTCGGGCCCGCCCCTGGAACTTGAACCCACGCTCACTGTG TCACCTGCCAAGAATCTTGAGCCAAGCCCGAGGGTGAAGCAAGTTTCATCAGCCACCAGT GGATTTCCTCCCATCCAAGAGCCCCTTCCTGCTCTTACTCCATTGGCCACCGATTTGCGG TCCCCATCCCGCGGGTCCCCTCTGAGGACAGACCCATCGACCACCAAGTTGATAGCTTCT TCTTCTGGACATGTCCCAGGGACGCCCATCCTAGGGGCCATCCAGGCCATCTTACCGGTT CCTGCCACCGCATTAGCCTCCATCAGTGGGAACCTCAAAGCGGAAAACAAGATCATGGTT CGAGTGGTTTACTGCTACAGCCTGCGGTACATCCTACTGAGAAAGAGTCTGGAGCAGCAA TTTCCAAACTCTCTAATCTTCGAGGAAGAAATATCTGCCCAGGCTACAGGGGAGTTTGAA GTGTTTGTGGATGGGAAACTGATACATTCAAAGAAGAATGGTGATGGCTTTGTGGATGAG GCCAAGCTACAGACAATTGTGAACCTGCTCAATGAGGAGTTCAAGAAAAGG // NIVO01013187.1:subseq(340976,100415) GeneWise match 47598 50415 222.43 + . NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 NIVO01013187.1:subseq(340976,100415) GeneWise cds 47598 48391 0.00 + 0 NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 NIVO01013187.1:subseq(340976,100415) GeneWise intron 48392 49858 0.00 + . NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 NIVO01013187.1:subseq(340976,100415) GeneWise cds 49859 49871 0.00 + 1 NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 NIVO01013187.1:subseq(340976,100415) GeneWise intron 49872 50002 0.00 + . NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 NIVO01013187.1:subseq(340976,100415) GeneWise cds 50003 50056 0.00 + 0 NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 NIVO01013187.1:subseq(340976,100415) GeneWise intron 50057 50166 0.00 + . NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 NIVO01013187.1:subseq(340976,100415) GeneWise cds 50167 50241 0.00 + 0 NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 NIVO01013187.1:subseq(340976,100415) GeneWise intron 50242 50340 0.00 + . NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 NIVO01013187.1:subseq(340976,100415) GeneWise cds 50341 50415 0.00 + 0 NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 // genewise output Score 29.62 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000029_1.0 83 RLVPPPAPAWIPTPVPTPVPVRNPTPVPTPARTLTPPV R +PPP P P+P P+P R P P + PP+ RHLPPPLPHHTLPPLPPPLPPRALPPSHCPLHSAAPPL NIVO01013187.1:-3710 ccccccccccacccccccccccgccctctccctggccc gatccctcaactcctccctccgctcccagctaccccct tttttttttttttttttttttgtttttccggcccttta // >NIVO01013187.1:subseq(340976,100415).pep RHLPPPLPHHTLPPLPPPLPPRALPPSHCPLHSAAPPL // >NIVO01013187.1:subseq(340976,100415).[3710:3595].sp CGTCATCTTCCTCCTCCTCTTCCTCATCATACTCTTCCTCCTCTTCCTCCTCCTCTTCCT CCTCGGGCTCTTCCTCCTTCTCACTGCCCGCTGCACTCCGCCGCTCCTCCTCTA // NIVO01013187.1:subseq(340976,100415) GeneWise match 3710 3597 29.62 - . NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 NIVO01013187.1:subseq(340976,100415) GeneWise cds 3710 3597 0.00 - 0 NIVO01013187.1:subseq(340976,100415)-genewise-prediction-1 //