------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 487212 - 487131
 Found by:  Infernal (score=15.77) Covels (score=12.31)
 Stem2 length = 9   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -12.86
 Type = 1

         ..(((((((................(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg---------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((................{[[[((({((((((......--.........))))))})))]]]}..--..-.)))))))..
 target  GAAUUACCAAUAGGCCCAGAAUGAAUGAAGCAGCUGGGUCAAAGC--GGAUACUAAGCUCAGGUGUGGAUGU--GU-CUGGUGAUGA
                                  ****           ^^^                       ****                 

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 1018293 - 1018371
 Found by:  Infernal (score=14.78) Covels (score=6.19)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -14.65
 Type = 1

         ..(((((((.............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (((((([(((............{[[[((((((((((......--.........))))))))))]]]}..--..-)))]))))))
 target  UUACUAAUAGCUCCAGAAAGACUGAAGCAGCUGGGUCAAAGU--GGAAGUGAUGCUCAGUUGUGGAUGU--GU-CUAGUGGUGA
                               ****           ^^^                       ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 362361 - 362448
 Found by:  Infernal (score=12.54)
 Stem2 length = 8   Apical loop length = 27   Insertion in stem2 = 0, 0
 Free Energy = -6.86
 Type = 1

         ..(((((((..........(((((((((((((...........................))))))))))))).........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccgAAAcCcuuuuuggggug--------ggccaggcCuGAUGuuu-uuucaugaccggc
         ..(((((((..........{[[{(((((({((...........................))}))))))}]]}.....-.-.)))))))..
 target  GCCUGGGAAUCUGCAUUUGUGACAACUUUCCUUCAUGGUUCUUCUAGAAGUGAGUGGGCAGAAGGGUUUGAUGUUGA-G-CUUUCCAGUC
                            ****                                             ****                  

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 521241 - 521325
 Found by:  Infernal (score=12.41) Covels (score=6.12)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -5.38
 Type = 1

         ..(((((((..........((((((((((.(((((.................))))).)))))))))).........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccug-gcccuAAAcC--cuuuuuggggcgggc-caggcCuGAUGuuu-uuucaugaccggc
         ..((({(((..........([[[(({((({((((...................))))})))}))]]]).....-...)))})))..
 target  CUGACUGUGACUCAGAUCAUGAACUCCUUAUUUCCAAAUUCAGACUUAAAUUUGAAGAAAGUAGGGAAAAUCU-CUACACUGUUCA
                            ****            ^^^                          ****                  

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 491674 - 491735
 Found by:  Infernal (score=12.09)
 Stem2 length = 7   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -8.5
 Type = 1

         ..(((((((.......(((((((((((.......................))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuu-uuucaugaccggc
         ..(((({(((--....([[{(((((((.........--------------)))))))}]]).....-..)))}))))..
 target  UCAUCAUACU--GUUUUGAUGACUAUAGCUUUGAGG--------------UAUAGUCUGAAGUCAA-GGAGUCUGAUUC
                         ****                                     ****                  

------- SECIS element -- id:6 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 831480 - 831538
 Found by:  Infernal (score=12.05)
 Stem2 length = 7   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -5.7
 Type = 1

         ..(((((((.......(((((((((((.......................)))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuuuuuucaugaccggc
         .....({((.--....([[{(((((((.........--------------)))))))}]])..--..-.))}).....
 target  UUUCAUACCA--UUCAUGAUGACUGUAGCUUUAUAG--------------UAUAGUCUGAAGU--CA-AGGAACCUUA
                         ****                                     ****                 

------- SECIS element -- id:7 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 593312 - 593400
 Found by:  Infernal (score=11.84) Covels (score=3.73)
 Stem2 length = 12   Apical loop length = 25   Insertion in stem2 = 1, 0
 Free Energy = -24.81
 Type = 1

         ..(((((((.........((((((((((..(((((.........................))))).))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccug--gcccuAAAcC----------cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .({(([(((((((.....([[((((((((.((([(.........................)])))))))))))]])----)))))))]))}).
 target  UAUGUGGGUGGGGUCAAAUGAAGAGGUUGACCCAGGAAGCAGAGAAGACGUUCAUGAAGGCGGGGCAACCUCUGAA----UCCUACCAAUCUU
                           ****              ^^                                  ****                 

------- SECIS element -- id:8 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 844924 - 844993
 Found by:  Infernal (score=11.32) Covels (score=2.45)
 Stem2 length = 8   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -6.02
 Type = 1

         ..(((((((.........(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (({((({((.........{[[(((({({((((------.............))))})}))))]]}----.--.))})))}))
 target  UCUGUGACUUUUCACUCAUGAUGGAUGAGCAU------ACACCUAUAGGAGGUGCACUUCUGGAC----C--CAGACACUGA
                           ****                   ^^                  ****                 

------- SECIS element -- id:9 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 368881 - 368806
 Found by:  Infernal (score=10.86) Covels (score=12.36)
 Stem2 length = 11   Apical loop length = 8   Insertion in stem2 = 2, 0
 Free Energy = -13.69
 Type = 1

         ..(((((((............((((((((((((..(((...............)))))))))))))))........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggc--ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...(({(((............([[(((((((((..({((.......-----.))}))))))))))]])----....)))}))...
 target  CUGAGCGCCCUCCCUGUGUUGUGAGAACCCCUGCCCUUUAACCCUC-----CAGUGCAGGGGUUUGAG----CCUCGGCACUGUA
                              ****              ^^                       ****                 

------- SECIS element -- id:10 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 66910 - 66830
 Found by:  Infernal (score=10.54) Covels (score=8.31)
 Stem2 length = 7   Apical loop length = 25   Insertion in stem2 = 0, 0
 Free Energy = -11.81
 Type = 1

         ..(((((((........(((((((((((((((.....................)))))))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((((((((.......([[{((((({({(.........................)})})))))}]])----...))))))))..
 target  CCUGGAGUGGCUCCAGAUGAUGGGGUUGUGUGCCAUCUCCCGCUCCAAUGGAGGUUCCCACCUCUGAG----CUCCUGCUCCACA
                          ****           ^^                              ****                 

------- SECIS element -- id:11 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 3822 - 3750
 Found by:  Infernal (score=10.48) Covels (score=0.24)
 Stem2 length = 10   Apical loop length = 12   Insertion in stem2 = 0, 1
 Free Energy = -10.54
 Type = 1

         ..(((((((.........(((((((((((((((................))))))))).))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         .((((((((.........([[[((((((((((------............))))))))).)]]])..--..-.)))))))).
 target  CUGCUGCUCGCUCCCCCAUGAAGAUGCUGUCU------GCUUCUUCUGGGGGGUAGUGUAUGGAGGC--AC-AGGGCAGUGA
                           ****                                       ****                 

------- SECIS element -- id:12 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 1030237 - 1030166
 Found by:  Infernal (score=10.27) Covels (score=7.0)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 1, 1
 Free Energy = -10.49
 Type = 1

         ..(((((((.......((((((((((.(((((...............))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         .({((((((---....([[{((((((.((((......-..........)))))))).))}]])..--.--.))))))}).
 target  UUAUCUCUA---AUAAUGAGUGACUCCAUGUCCAAGG-AGAGGUGGCUGCAUGGGUGCAGGAGGG--C--CUAGAGGAGC
                         ****             ^^                        ****