genewise output Score 22.96 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000028_1.0 157 KVLLHFVQKSPGDY K++LHFV + PG Y KIILHFVGQPPGSY NIVO01017783.1494646 aaacctggcccgat atttattgaccgga attgttgtgatctt // >NIVO01017783.1:subseq(851831,1164089).pep KIILHFVGQPPGSY // >NIVO01017783.1:subseq(851831,1164089).[494646:494687].sp AAAATTATTCTGCATTTTGTGGGTCAGCCACCTGGCAGTTAT // NIVO01017783.1:subseq(851831,1164089) GeneWise match 494646 494687 22.96 + . NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise cds 494646 494687 0.00 + 0 NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 // genewise output Score 338.48 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000028_1.0 1 MSTVDLARVGACILKHAVTGE AVELR MSTVDLARVGAC+LKHAVTGE AVELR MSTVDLARVGACVLKHAVTGE AVELR NIVO01017783.1-52396 aaaggcgcgggtgcacggaggGTGAGGC Intron 1 CAGgggcc tgctatcgtgcgttaactcga<0-----[52333:52135]-0>ctatg gtggctcctcgtcggcgccgg caggg SPP00000028_1.0 27 SLWREHACVVAGLRRFGCVVCRWIAQDLSSLAGLLDQHGVRLVGVGPEA SLW+E ACVVAGLRRFGC+VCRWIA+DLS+L GLLDQHGVRLVGVGPEA SLWQEQACVVAGLRRFGCMVCRWIARDLSNLKGLLDQHGVRLVGVGPEA NIVO01017783.1-52119 actcgcgtggggtcctgtagtctagcgcaacagccgccggccggggcgg gtgaaacgttcgtggtggttgggtcgatgatagttaaagtgttgtgcac cggggggcggccggccccggtcgccccccccggcgcgccgcggcggagc SPP00000028_1.0 76 LGLQEFLDGDYFAG LYLDESKQL LGLQEFLDG YFAG LYLDESKQ LGLQEFLDGGYFAG E:E[gag] LYLDESKQF NIVO01017783.1-51972 cgccgtcgggttggGGTGCCTG Intron 2 CAGAGctcggaact tgtaattaggatcg <1-----[51929:51230]-1> tataagaat gcgggcgttcctaa ccgcgcggt SPP00000028_1.0 100 YKELGFK YNSLSILPAALGKPVR YKELGFK YNSLSILPAALGKPVR YKELGFK R:R[cgg] YNSLSILPAALGKPVR NIVO01017783.1-51200 tagcgtaCGGTGAGCT Intron 3 CAGGtaataaccggcgacgc aaatgta <2-----[51177:50635]-2> aagtgttccctgactg cgggccg cccgccggtcgagttt SPP00000028_1.0 124 DVAAK AKAVGIQGNLSGDLLQSGGLL DVAAK AKAVGIQGNLSGDLLQSGGLL DVAAK AKAVGIQGNLSGDLLQSGGLL NIVO01017783.1-50585 ggggaGTTTGTG Intron 4 CAGgagggacgattggcccaggcc atcca<0-----[50570:50491]-0>cactgtagatcgattagggtt tgccg cgtcccggtgtgtgggcaggg SPP00000028_1.0 150 VVSK GDKVLLHFVQKSPGDYVPK VV+K GDKVLLHFVQKSPGDY P VVAK G:G[ggt] GDKVLLHFVQKSPGDYAPP NIVO01017783.1-50427 gggaGGTGGGCT Intron 5 CAGGTggagccctgcatcggtgcc ttca <1-----[50414:50122]-1> gaatttattaaccgaaccc gtca ttagggctcggcgtcccgt SPP00000028_1.0 174 EHILQVLGISAEVCASDPPQ E ILQ LGISAEV S+PPQ ESILQALGISAEVGPSEPPQ NIVO01017783.1-50062 gaaccgtgatggggcagccc agttactgtccatgcgacca gccggcgcctagccccagcg // Making a E in phase 1 intron Making a R in phase 2 intron Making a G in phase 1 intron >NIVO01017783.1:subseq(851831,1164089).pep MSTVDLARVGACVLKHAVTGEAVELRSLWQEQACVVAGLRRFGCMVCRWIARDLSNLKGL LDQHGVRLVGVGPEALGLQEFLDGGYFAGELYLDESKQFYKELGFKRYNSLSILPAALGK PVRDVAAKAKAVGIQGNLSGDLLQSGGLLVVAKGGDKVLLHFVQKSPGDYAPPESILQAL GISAEVGPSEPPQ // >NIVO01017783.1:subseq(851831,1164089).[52396:50001].sp ATGAGTACGGTGGACCTTGCCCGCGTTGGCGCGTGTGTCCTGAAGCACGCGGTCACCGGG GAGGCCGTAGAGCTGCGGAGCCTGTGGCAGGAGCAGGCGTGCGTGGTGGCCGGCTTGCGG CGCTTCGGCTGCATGGTGTGTCGCTGGATCGCCCGCGACCTCAGCAACCTCAAGGGGCTC CTGGACCAGCACGGCGTGCGCCTGGTGGGCGTGGGGCCAGAGGCCCTGGGCCTGCAGGAG TTCCTGGATGGTGGCTACTTTGCAGGAGAGCTCTACCTGGACGAGAGCAAGCAGTTTTAC AAGGAGCTGGGCTTCAAGCGGTACAACAGCTTGAGCATCCTGCCGGCTGCCCTGGGAAAG CCTGTTCGTGATGTGGCCGCCAAGGCCAAGGCTGTCGGCATCCAGGGGAATTTGTCTGGG GATCTGCTGCAGAGCGGAGGGCTGCTGGTGGTTGCCAAAGGTGGTGATAAAGTGCTGCTG CACTTTGTCCAGAAGTCCCCGGGTGACTACGCCCCGCCTGAGAGCATCCTGCAGGCCTTG GGCATCTCTGCAGAGGTCGGCCCCAGCGAACCGCCCCAG // NIVO01017783.1:subseq(851831,1164089) GeneWise match 52396 50003 338.48 - . NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise cds 52396 52334 0.00 - 0 NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise intron 52333 52135 0.00 - . NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise cds 52134 51930 0.00 - 0 NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise intron 51929 51230 0.00 - . NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise cds 51229 51178 0.00 - 2 NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise intron 51177 50635 0.00 - . NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise cds 50634 50571 0.00 - 1 NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise intron 50570 50491 0.00 - . NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise cds 50490 50415 0.00 - 0 NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise intron 50414 50122 0.00 - . NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 NIVO01017783.1:subseq(851831,1164089) GeneWise cds 50121 50003 0.00 - 2 NIVO01017783.1:subseq(851831,1164089)-genewise-prediction-1 //