------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 149647 - 149723
 Found by:  Infernal (score=17.06) Covels (score=18.25)
 Stem2 length = 12   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -11.09
 Type = 1

         ..(((((((..........(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .([(([(((..........{[[[((((((((((((....--.......))))))))))))]]]}..--....)))]))]).
 target  CUAAUAGCUCCAGAAAGAAUGAAGUGGCUGGGCAAAAGC--AGAAACAUUGCUCAGUUGUGGAUGU--GUCUAGCGGUGAA
                            ****            ^^                       ****                 

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 122052 - 122121
 Found by:  Infernal (score=16.9) Covels (score=16.5)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -13.66
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((({[(---....{[[[([((((((((......--.........))))))))])]]]}..--..-.)]})))}).
 target  GCUCCAGAA---AGAGUGAAGAGGCUGAGCCAAAGU--GAAAACAAUGCUCAGCUGUGGAUGU--AU-CUGGUGGUGA
                         ****           ^^^                       ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 248619 - 248687
 Found by:  Infernal (score=10.27) Covels (score=7.61)
 Stem2 length = 7   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -4.36
 Type = 1

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({{((((---....([[{(([((({{(...........-----....)}})))]))}]])..--....))))}})..
 target  AAUCAUCUG---UAGGUGAAGCAAGUUCUACAAAACAGCU-----UCUGAACACUGGCAGAGGA--CCCCCAGAAAGGC
                         ****           ^^^                        ****