------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 373448 - 373531
 Found by:  Infernal (score=15.26) Covels (score=7.43)
 Stem2 length = 9   Apical loop length = 26   Insertion in stem2 = 0, 0
 Free Energy = -24.37
 Type = 1

         ..(((((((.......(((((((((((((((......................)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-------cuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ...((((((---((((([[{(((((((((..........................)))))))))}]])......)-)))))))))...
 target  CUCAGAGGA---GGGGUGAUAUUCAGGGUGCCAGCUCUCUCUAGCUCCCCGAGAGGCCCUGAAUUGAAAAGUAUC-CCUUCUUCUCCC
                         ****          ^^                                ****                    

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 2541 - 2614
 Found by:  Infernal (score=13.47) Covels (score=9.26)
 Stem2 length = 10   Apical loop length = 8   Insertion in stem2 = 1, 0
 Free Energy = -6.53
 Type = 1

         ..(((((((.......((((((((((((.(((...............)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggc-ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..(({({((.......{[[(((({[(((.(((.....--.-----..))))))]}))))]]}.......-...))})}))..
 target  GAGAAGAUAUUUCCAGUGAAGGUUGGGAUUGGAAAGA--U-----GGUCAUCCACACCUGAUGAUUUCU-GCUUAACCUUGG
                         ****            ^^^                       ****                    

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 20816 - 20733
 Found by:  Infernal (score=11.78) Covels (score=4.04)
 Stem2 length = 9   Apical loop length = 24   Insertion in stem2 = 0, 0
 Free Energy = -8.75
 Type = 1

         ..(((((((........(((((((((((((........................)))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccgAAAcCcuuuuuggggug-----ggccaggcCuGAUGuu-u-uuucaugaccggc
         ..(((((((........{[[{(([((((((........................))))))]))}]]}......-.-.)))))))..
 target  CCUGGGACUCCAGCUAAUGAUAGGGUUUUCCAGAUGAGAAUUUUUUGGUGCCUAGAAGACACUUGAUUCUGAA-A-CAGUUCUACA
                          ****                                          ****                   

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 344497 - 344569
 Found by:  Infernal (score=11.41)
 Stem2 length = 9   Apical loop length = 19   Insertion in stem2 = 0, 0
 Free Energy = -13.01
 Type = 1

         ..(((((((.......(((((((((((((((.................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(({((((.--....([[((({(((((((...................)))))))})))]])----..-.))))}))..
 target  UCUUAGCAGA--UAGGGGAAGGCUUUAAGGGACACCUAUAUACCUGAGGCCUUAGACUCUGAU----AU-ACUGCAAACC
                         ****                                       ****                 

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 109921 - 109999
 Found by:  Infernal (score=11.07) Covels (score=5.25)
 Stem2 length = 11   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -18.56
 Type = 1

         ..(((((((..........(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((((((......([[((([((((((((...............))))))))])))]])..--)))))))))))..
 target  UAUUGGAAGGCUCCUGGGUUGAAGCAAGGGUUUUACAACUGAACUGUGAAGGGCUUUGGUUGAGCU--GGGUCUUCCAGGC
                            ****             ^^                      ****