genewise output
Score 21.99 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_1.0  154 IRLGVWYNFFR                                       
                     +R G+W NFFR                                       
                     FRWGIWLNFFR                                       
NIVO01064043.1307625 tatgatcatta                                       
                     tgggtgtattg                                       
                     cagtagctcta                                       


//
>NIVO01064043.1:subseq(0,374980).pep
FRWGIWLNFFR
//
>NIVO01064043.1:subseq(0,374980).[307625:307657].sp
TTCAGATGGGGTATATGGCTCAATTTCTTTAGA
//
NIVO01064043.1:subseq(0,374980)	GeneWise	match	307625	307657	21.99	+	.	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
NIVO01064043.1:subseq(0,374980)	GeneWise	cds	307625	307657	0.00	+	0	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
//

genewise output
Score 420.97 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000026_1.0    1 MSFLQDPSFFTMGMWSIGAGALGAAALALLLANTDVFLSKPQKAALEYL 
                     MSFLQDPSFF+MGMWSIGAGA+G AALALLLANTD+FL+KPQKAALEYL 
                     MSFLQDPSFFSMGMWSIGAGAVGVAALALLLANTDMFLAKPQKAALEYL 
NIVO01064043.1-30496 attccgcattaagattagggggggggtgcccgaagatcgaccaggtgtc 
                     tcttaacgttgtgtgctgcgctgtcctctttcacatttcacaacctaat 
                     gtccgtctcccgaggcctggcaactcgagcgccacgtgcgcgaaaggtg 


SPP00000026_1.0   50 EDIDLKTLEK                          PRTFKAKELWEKN 
                     EDIDLKT+EK                            TFKAK LWEKN 
                     EDIDLKTMEK          E:D[gat]        AVTFKAKALWEKN 
NIVO01064043.1-30349 ggagcaaagaGGTAAGTG  Intron 1   CAGATggatagagctgaa 
                     aatatactaa <1-----[30318:28301]-1>  ctctacactgaaa 
                     gcacgaaggg                          aattagggcgggt 


SPP00000026_1.0   74 GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EAADLSSLK 
                     GAVIMAVRRPGCFLCRE                       EAADLSSLK 
NIVO01064043.1-28259 gggaaggcacgttctcgGTGAGTG  Intron 2   CAGggggtttca 
                     gctttctggcggttgga<0-----[28208:27517]-0>accatccta 
                     atgtgtgggacccctgg                       gtatgccgg 


SPP00000026_1.0  100 SMLDQLGVPLYAVVKEHIRTEVKDFQPYFKGEIFLDEK            
                       LD+LGVPLYAVVKEHI+ EVKDFQPYFKGEIFLDEK            
                     PRLDELGVPLYAVVKEHIKNEVKDFQPYFKGEIFLDEK            
NIVO01064043.1-27489 catggcggcctgggagcaaaggagtccttaggatcgga            
                     cgtaatgtctacttaaataaataatacatagatttaaa            
                     cggcggtccctagaggccgtatgccgttcaaaccgtag            


SPP00000026_1.0  138                        KKFYGPQRRKMMFMGFIRLGVWYNFF 
                                            KKFYGPQ RKM+FMGF+RLGV  NFF 
                                            KKFYGPQERKMVFMGFVRLGVLQNFF 
NIVO01064043.1-27375 GTATGTG  Intron 3   CAGaattgccgcaagtagtgccggtcatt 
                     <0-----[27375:26812]-0>aatagcaagattttgttgtgttaatt 
                                            agctcaaaggggcgatctgccgaccc 


SPP00000026_1.0  164 RAWNGGFSGNLEGEGFILGGVFVVGSGKQ                     
                     RAW GGFSGNL+GEGFILGGVFV+G GKQ                     
                     RAWKGGFSGNLDGEGFILGGVFVMGPGKQ                     
NIVO01064043.1-26733 cgtaggttgacggggtacgggtgagcgacGTAAATT  Intron 4    
                     gcgaggtcgatagagtttggttttgcgaa<0-----[26646:22917] 
                     gcgaacttacgtcgccctgactggaaagg                     


SPP00000026_1.0  193    GILLEHREKEFGDKVNLLSVLEAAKMIKPQTLASEKK          
                        GILLEHREKEFGDKVNL SVLEAA+ I+PQT ASEK+          
                        GILLEHREKEFGDKVNLTSVLEAARKIRPQTSASEKQ          
NIVO01064043.1-22919 TAGgaccgccgagtggagacatgcgggaaaaccatgtgac          
                     -0>gtttaagaaatgaatatccttaccgatgcaccccaaa          
                        ccttgcaaaatacaacgtttgattggcaagtgcagaa          


//
Making a D in phase 1 intron
>NIVO01064043.1:subseq(0,374980).pep
MSFLQDPSFFSMGMWSIGAGAVGVAALALLLANTDMFLAKPQKAALEYLEDIDLKTMEKD
AVTFKAKALWEKNGAVIMAVRRPGCFLCREEAADLSSLKPRLDELGVPLYAVVKEHIKNE
VKDFQPYFKGEIFLDEKKKFYGPQERKMVFMGFVRLGVLQNFFRAWKGGFSGNLDGEGFI
LGGVFVMGPGKQGILLEHREKEFGDKVNLTSVLEAARKIRPQTSASEKQ
//
>NIVO01064043.1:subseq(0,374980).[30496:22804].sp
ATGTCTTTCCTCCAGGATCCCAGTTTCTTCAGCATGGGAATGTGGTCCATCGGTGCGGGG
GCCGTAGGAGTCGCTGCCTTGGCACTGCTCCTGGCCAACACAGACATGTTTCTGGCCAAG
CCCCAGAAAGCAGCATTGGAGTATCTGGAGGACATAGACCTGAAAACAATGGAGAAGGAT
GCAGTAACTTTTAAAGCGAAGGCGCTCTGGGAGAAGAATGGAGCTGTGATTATGGCTGTG
CGGAGGCCAGGCTGCTTCCTCTGTCGGGAGGAGGCTGCAGATTTGTCCTCCCTGAAGCCC
AGGTTGGACGAGCTGGGTGTCCCCCTCTATGCAGTGGTAAAGGAGCACATCAAGAATGAA
GTTAAGGACTTCCAGCCTTATTTCAAAGGAGAAATCTTCCTGGATGAAAAGAAAAAGTTC
TATGGCCCACAAGAACGGAAGATGGTGTTCATGGGATTTGTCCGTCTGGGCGTCTTGCAA
AACTTCTTCCGGGCCTGGAAAGGAGGCTTTTCTGGAAACCTGGATGGCGAGGGCTTCATC
CTTGGGGGAGTCTTTGTGATGGGACCAGGAAAGCAGGGCATCCTTCTTGAGCACCGAGAA
AAAGAATTTGGAGACAAAGTAAACCTGACTTCTGTTCTGGAAGCTGCTAGGAAGATCAGA
CCACAGACTTCGGCCTCAGAGAAACAA
//
NIVO01064043.1:subseq(0,374980)	GeneWise	match	30496	22806	420.97	-	.	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
NIVO01064043.1:subseq(0,374980)	GeneWise	cds	30496	30319	0.00	-	0	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
NIVO01064043.1:subseq(0,374980)	GeneWise	intron	30318	28301	0.00	-	.	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
NIVO01064043.1:subseq(0,374980)	GeneWise	cds	28300	28209	0.00	-	2	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
NIVO01064043.1:subseq(0,374980)	GeneWise	intron	28208	27517	0.00	-	.	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
NIVO01064043.1:subseq(0,374980)	GeneWise	cds	27516	27376	0.00	-	0	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
NIVO01064043.1:subseq(0,374980)	GeneWise	intron	27375	26812	0.00	-	.	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
NIVO01064043.1:subseq(0,374980)	GeneWise	cds	26811	26647	0.00	-	0	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
NIVO01064043.1:subseq(0,374980)	GeneWise	intron	26646	22917	0.00	-	.	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
NIVO01064043.1:subseq(0,374980)	GeneWise	cds	22916	22806	0.00	-	0	NIVO01064043.1:subseq(0,374980)-genewise-prediction-1
//