------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 75292 - 75366
 Found by:  Infernal (score=30.25) Covels (score=39.15)
 Stem2 length = 11   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -14.32
 Type = 1

         ..(((((((.......(((((((((((((((...............))))))))))))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..([((([(---(...{[[{(({(((((((((.............)))))))))}))}]]}.....-..))])))])..
 target  GUGACUGAC---AUUAUGAAGGCCUGUACUGAAGACAGCAAGCUGUUAGUACAGACCAGAUGCUUU-CUUGGCAGGCUC
                         ****                                     ****                  

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 605282 - 605353
 Found by:  Infernal (score=19.41) Covels (score=18.16)
 Stem2 length = 8   Apical loop length = 10   Insertion in stem2 = 0, 0
 Free Energy = -5.54
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ..(((((((---....{[[{(({{({(((((........-----..)))))})}}))}]]}.......-...)))))))..
 target  CAAGCGUUU---CUCAUGAUGGACUCUGCAUAAUGCUGA-----UGAUGCAUAACUCUGAUGAUGCUG-UGAAAGUGCUGC
                         ****           ^^                        ****                    

------- SECIS element -- id:3 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 365897 - 365823
 Found by:  Infernal (score=17.73) Covels (score=16.49)
 Stem2 length = 9   Apical loop length = 12   Insertion in stem2 = 0, 0
 Free Energy = -15.86
 Type = 1

         ..(((((((........(((((((((((((((................)))))))))))))))..........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ....(({(((.......{[[((((({(((((------............)))))})))))]]}......-..)))}))....
 target  UCAAGGCCGGUGCAAAAUGAAGACAGUGCCU------GCACACAAGAAAGGGCAGUGUCUGACAUGCAU-CCUUGCCCACCA
                          ****                                      ****                   

------- SECIS element -- id:4 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 221128 - 221202
 Found by:  Infernal (score=14.36) Covels (score=4.27)
 Stem2 length = 7   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -7.86
 Type = 1

         ..(((((((.........(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({{(((((........{[[{(((({{{(((......---........)))}}}))))}]]}..--...)))))}})..
 target  UCCCCUUGUGCCUUUAAAUGAAUAGAUAUGGCCAAAGU---GAUAGAAUGCCUCUUCUGAGAUUA--GGUUACAAAAGAC
                           ****           ^^^                       ****                 

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 1393396 - 1393297
 Found by:  Infernal (score=13.51) Covels (score=2.42)
 Stem2 length = 10   Apical loop length = 26   Insertion in stem2 = 1, 0
 Free Energy = -21.5
 Type = 1

         ..(((((((...............((((((((((.(((((........................))))))))))))))).............)))))))..
 model   uucggucaugcg--------UuaAUGAcGgccug-gcccuAAAcCcuuuuugggg---------cgggccaggcCuGAUGuu----u-uuucaugaccggc
         (((((((((...............([[[((((((.((((..........................))))))))))]]]).........-...)))))))))
 target  AGACCACAUCCUCAUCUAACUCAAUGAAGCUAUGAACCCUGUGUGUAGGGCCAACCAUGACAGGUGGGUCAUAGUGGAGAGUUUUGAC-AAAAUGUGGUCU
                                 ****                                               ****                      

------- SECIS element -- id:6 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 878459 - 878380
 Found by:  Infernal (score=13.42) Covels (score=12.02)
 Stem2 length = 10   Apical loop length = 13   Insertion in stem2 = 0, 0
 Free Energy = -4.33
 Type = 1

         ..(((((((.............(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcg------UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..({{((((.............{[[{((((({(((((.....--........)))))})))))}]]}..--....))))}})..
 target  GAAAAGUCAAUUAACCAGAGGAUGACGGUGUCACUGAAAGUG--UUAGUUGCUCAGUUAUGUCUGACUC--UUUGUGACCCUAU
                               ****           ^^                        ****                 

------- SECIS element -- id:7 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 1306123 - 1306205
 Found by:  Infernal (score=12.14) Covels (score=0.57)
 Stem2 length = 12   Apical loop length = 20   Insertion in stem2 = 0, 0
 Free Energy = -13.51
 Type = 1

         ..(((((((...........(((((((((((((((......................)))))))))))))))........)))))))..
 model   uucggucaugcg----UuaAUGAcGgccuggcccuAAAcC-------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(({((((...........([[{((([((((((((((................))))))))))])))}]])----.--.))))}))..
 target  UCAUCUCUUCACUGACUCUGUGACCAAACAAUCCUCAGCCAUGACUCACAACUCCUGGGGAUUGGUUGUGAA----C--AAAGAAAUUG
                             ****              ^^                            ****                 

------- SECIS element -- id:8 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 388422 - 388500
 Found by:  Infernal (score=11.74) Covels (score=14.19)
 Stem2 length = 8   Apical loop length = 19   Insertion in stem2 = 1, 0
 Free Energy = -6.37
 Type = 1

         ..(((((((.......((((((((((((.(((.................)))))))))))))))............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggc-ccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuu---u-uuucaugaccggc
         .((({((((---....{[[{(({((((-.((...................))-))))}))}]]}........-...))))}))).
 target  CUUAAGGAG---AUAGUGACACUCUGG-GGCCAACCCUGUACUUGCACGAGC-CCAGCGUAGAUGUCUCAUU-AACUUCUAUGAC
                         ****            ^^                          ****                     

------- SECIS element -- id:9 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 594729 - 594808
 Found by:  Infernal (score=11.56) Covels (score=3.65)
 Stem2 length = 8   Apical loop length = 24   Insertion in stem2 = 0, 0
 Free Energy = -5.56
 Type = 1

         ..(((((((.......(((((((((((((((......................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((({((((---....{[[{({((({((((........................))))})))})}]]}..--....))))}))).
 target  GUUUAGCAU---CCAUUGAUGAAUCAAGUUCAAAACCAUCAUUUCAUUUUGAAUGGCUAGAUAUUGACAU--UCUUGUGUAAGAG
                         ****           ^^^                              ****                 

------- SECIS element -- id:10 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 1380888 - 1380819
 Found by:  Infernal (score=11.13) Covels (score=1.45)
 Stem2 length = 9   Apical loop length = 11   Insertion in stem2 = 0, 0
 Free Energy = -8.56
 Type = 1

         ..(((((((.......(((((((((((((...................)))))))))))))............)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccgAAAcCcuuuuuggggugggccaggcCuGAUGuu---u-uuucaugaccggc
         ..((([(((---....{[[{(((((((((...........--------)))))))))}]]}........-...)))])))..
 target  GAGUGACCU---AGUAUGACAGUAGGUUACAGUCAGAUAA--------UAGCCUAUUUGAUACUGAGAU-UACAGGGUGCAG
                         ****                                     ****                     

------- SECIS element -- id:11 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 485314 - 485233
 Found by:  Infernal (score=10.91)
 Stem2 length = 10   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -13.35
 Type = 1

         ..(((((((........((((((((((.(((((....................))))).))))))))))........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccug-gcccuAAAcC-----cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         ..(((((((........([[(((((({[((((......................))))]}))))))]])----....)))))))..
 target  ACCUGUGAGUCCCUGGGUGAAUUAUUUGCCUCUCAUUUUUCUCAUCUUUAGAAUGAGGAUAAUAAUGAA----CUAUCUUAUAGAG
                          ****                                            ****                 

------- SECIS element -- id:12 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 309598 - 309515
 Found by:  Infernal (score=10.81) Covels (score=11.02)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -5.79
 Type = 1

         ..(((((((............(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcg-----UuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ...({((((............([[{{((([((((((.....-.........))))))])))}}]]).......-...))))})...
 target  UCUUUGUAACUUUACCUUCAAUGACACCUGCUAUGAAAGGU-UUGAUUGCCUCAUGGAAGGCUGAACUGACUG-GGCUUAUUACAC
                              ****           ^^                        ****                    

------- SECIS element -- id:13 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 909577 - 909496
 Found by:  Infernal (score=10.79) Covels (score=8.33)
 Stem2 length = 8   Apical loop length = 23   Insertion in stem2 = 0, 0
 Free Energy = -5.66
 Type = 1

         ..(((((((.......(((((((((((((((...................)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...({((((.......{[[{((((((({(.......................)})))))))}]]}......-.-.))))})...
 target  CGUUCACUGCAGAAAAUGACUACAUCAUGCUAAAUGCUUCGUUUUCAACAUUCCUGGUGUGUGACAUAGAU-U-ACAGUCACAU
                         ****           ^^^                           ****