genewise output Score 377.94 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000025_1.0 1 MRLLLLLLVAASAMVRSEASANLGG-VPSKRLKMQYATGPLLKFQI MRLLLLLLVAASA+VRS+ASANLGG VP KRLKMQYATGPLLKFQI MRLLLLLLVAASAVVRSDASANLGGGVPGKRLKMQYATGPLLKFQI NIVO01008816.1:49955 aaccccccgggtgggcaggtgatggggcgaataactgagcccatca tgtttttttccccttggacccatgggtcgagtataaccgcttatat ggtgatggggggggcgctcaccgcccgtcgaagggccggtgcgcgt SPP00000025_1.0 46 VSXGYRRVFEEYMRVISQRYPDI VSXGYRRVFEEYMRVISQRYPDI C:C[tgt] VSXGYRRVFEEYMRVISQRYPDI NIVO01008816.1:50093 TGGTAAGTA Intron 1 CAGTgttgtacgtggtacgaacctcga <2-----[50095:69612]-2> tcggaggttaaatgttgagacat tcatcgggtggcggttcggctcc SPP00000025_1.0 70 RIEGENYLPQPIY HIASFLSVFK RIEGENYLPQPIY HIASFLSVFK RIEGENYLPQPIY R:R[aga] HIASFLSVFK NIVO01008816.1:69683 cagggatccccatAGGTAAGTA Intron 2 TAGAcagttctgta gtagaaatcacta <2-----[69724:70330]-2> atccttctta caaagtcctaaat caatcgaccg SPP00000025_1.0 94 LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK LVLIGLIIVGKDPFAFFGMQAPSIWQWGQENK NIVO01008816.1:70362 cgtagtaaggagctgttgacgcaatctgcgaa ttttgttttgaactcttgtaccgtgaggaaaa aaaacaattcgttttctcgattccgggcaatg SPP00000025_1.0 126 VYACMMVFFLSNMIENQCMSTGAFEI VYACMMVFFLSNMIENQCMSTGAFEI VYACMMVFFLSNMIENQCMSTGAFEI NIVO01008816.1:70458 GTATGTA Intron 3 TAGgtgtaagtttaaaagactataggtga <0-----[70458:72341]-0>tacgttttttgattaaagtccgctat ctatggaccgccgtacgtgaatatga SPP00000025_1.0 152 TLN VPVWSKLESGHLPSMQQLVQ TLN VPVWSKLESGHLPSMQQLVQ TLN D:D[gat] VPVWSKLESGHLPSMQQLVQ NIVO01008816.1:72420 ataGGTAGGTT Intron 4 TAGATgcgttatgtgccctacccgc cta <1-----[72430:74559]-1> tctgcatacgatcctaatta tgt atggtggattctacgagtta SPP00000025_1.0 176 ILDNEMKLNVHMDSIPHHRS ILDNEMKLNVHMDSIPHHRS ILDNEMKLNVHMDSIPHHRS NIVO01008816.1:74622 acgagaacagcagtacccct ttaaatatatatactcaagc ttctaggccgtgtacactaa // Making a C in phase 2 intron Making a R in phase 2 intron Making a D in phase 1 intron >NIVO01008816.1:subseq(494279,1406561).pep MRLLLLLLVAASAVVRSDASANLGGGVPGKRLKMQYATGPLLKFQICVSXGYRRVFEEYM RVISQRYPDIRIEGENYLPQPIYRHIASFLSVFKLVLIGLIIVGKDPFAFFGMQAPSIWQ WGQENKVYACMMVFFLSNMIENQCMSTGAFEITLNDVPVWSKLESGHLPSMQQLVQILDN EMKLNVHMDSIPHHRS // >NIVO01008816.1:subseq(494279,1406561).[49955:74681].sp ATGAGGCTTCTGCTACTTCTGCTGGTGGCGGCGTCGGCGGTGGTCCGGAGCGATGCCTCA GCCAACTTGGGCGGCGGCGTGCCTGGCAAGAGATTAAAGATGCAGTACGCCACGGGGCCT CTGCTCAAGTTCCAGATTTGTGTTTCCTGAGGTTACAGGCGGGTGTTTGAGGAGTACATG CGGGTTATTAGCCAGCGGTACCCTGACATCCGCATAGAAGGAGAGAATTACCTCCCTCAA CCAATATATAGACACATAGCATCTTTCCTGTCAGTCTTCAAGCTAGTATTAATAGGCTTA ATAATTGTTGGCAAGGATCCTTTTGCTTTCTTTGGCATGCAAGCTCCTAGCATCTGGCAG TGGGGCCAAGAAAATAAGGTCTATGCATGTATGATGGTATTCTTCTTGAGCAACATGATT GAAAACCAGTGTATGTCAACAGGTGCATTTGAGATAACTTTGAATGATGTACCTGTGTGG TCTAAGTTGGAATCTGGTCACCTTCCATCCATGCAACAGCTTGTTCAAATTCTTGACAAT GAAATGAAGCTCAACGTGCATATGGATTCAATCCCACACCATCGATCA // NIVO01008816.1:subseq(494279,1406561) GeneWise match 49955 74681 377.94 + . NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 NIVO01008816.1:subseq(494279,1406561) GeneWise cds 49955 50094 0.00 + 0 NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 NIVO01008816.1:subseq(494279,1406561) GeneWise intron 50095 69612 0.00 + . NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 NIVO01008816.1:subseq(494279,1406561) GeneWise cds 69613 69723 0.00 + 1 NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 NIVO01008816.1:subseq(494279,1406561) GeneWise intron 69724 70330 0.00 + . NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 NIVO01008816.1:subseq(494279,1406561) GeneWise cds 70331 70457 0.00 + 1 NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 NIVO01008816.1:subseq(494279,1406561) GeneWise intron 70458 72341 0.00 + . NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 NIVO01008816.1:subseq(494279,1406561) GeneWise cds 72342 72429 0.00 + 0 NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 NIVO01008816.1:subseq(494279,1406561) GeneWise intron 72430 74559 0.00 + . NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 NIVO01008816.1:subseq(494279,1406561) GeneWise cds 74560 74681 0.00 + 2 NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 // genewise output Score 22.15 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000025_1.0 109 FFGMQAPSIW FFG Q PS+W FFGAQPPSVW NIVO01008816.-340308 ttggccctgt ttgcaccctg ctctgtttag // >NIVO01008816.1:subseq(494279,1406561).pep FFGAQPPSVW // >NIVO01008816.1:subseq(494279,1406561).[340308:340277].sp TTCTTTGGCGCTCAGCCTCCTTCTGTATGG // NIVO01008816.1:subseq(494279,1406561) GeneWise match 340308 340279 22.15 - . NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 NIVO01008816.1:subseq(494279,1406561) GeneWise cds 340308 340279 0.00 - 0 NIVO01008816.1:subseq(494279,1406561)-genewise-prediction-1 //