Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../SelS-human.fa -t SelS-NIVO01025374.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000024_1.0 # Protein # Selenoprotein S (SelS) # Homo sapiens # Complete
        Target: NIVO01025374.1:subseq(1283219,100530) Ammotragus lervia isolate NAZ scaffold355_len2295547_cov70, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 820
   Query range: 0 -> 189
  Target range: 50530 -> 49960

     1 : MetGluArgGlnGluGluSerLeuSerAlaArgProAlaLeuGluThrGluGlyLeuArg :    20
         |||||||||.!.! !!!:..!||||||.!!||||||.!!|||:!!||||||||||||!.!
         MetGluArgAspGlyAspGlnLeuSerThrArgProThrLeuLysThrGluGlyLeuHis
 50530 : ATGGAGCGGGACGGGGATCAGCTGTCCACACGGCCCACCCTCAAGACCGAGGGGCTGCAT : 50473

    21 : PheLeuHisThrThrValGlySerLeuLeuAlaThrTyrGlyTrpTyrIleValPheSer :    40
         |||||||||..!|||||||||||||||! !|||||||||||||||||||||:!!||||||
         PheLeuHisValThrValGlySerLeuProAlaThrTyrGlyTrpTyrIleIlePheSer
 50472 : TTCCTTCACGTCACAGTGGGCTCCCTGCCGGCCACTTACGGCTGGTACATCATCTTCAGC : 50413

    41 : CysIleLeuLeuTyrValValPheGlnLysLeuSerAlaArgLeuArgAlaLeuArgGln :    60
         ||||||||||||||||||||||||||||||||||||.!!|||||||||||||||||||||
         CysIleLeuLeuTyrValValPheGlnLysLeuSerThrArgLeuArgAlaLeuArgGln
 50412 : TGCATCCTTCTCTACGTGGTGTTTCAGAAGCTTTCCACCCGGTTGAGGGCCTTGAGGCAG : 50353

    61 : ArgGlnLeuAspArgAlaAlaAlaAlaValGluProAspValValValLysArgGlnGlu :    80
         |||!!.||||||!:!||||||||||||:!!|||||||||:!!|||||||||!:!||||||
         ArgHisLeuAspGlnAlaAlaAlaAlaLeuGluProAspIleValValLysGlnGlnGlu
 50352 : AGGCACTTAGATCAAGCTGCCGCTGCTCTGGAACCTGATATTGTTGTTAAACAACAGGAG : 50293

    81 : AlaLeuAlaAlaAlaArgLeuLysMetGlnGluGluLeuAsnAlaGlnValGluLysHis :   100
         |||||||||||||||!.!||||||||||||||||||||||||||||||||||||||||||
         AlaLeuAlaAlaAlaHisLeuLysMetGlnGluGluLeuAsnAlaGlnValGluLysHis
 50292 : GCTTTAGCAGCTGCTCATTTGAAAATGCAAGAAGAATTAAATGCACAAGTTGAaaaacat : 50233

   101 : LysGluLysLeuLysGlnLeuGluGluGluLysArgArgGlnLysIleGluMetTrpAsp :   120
         ||||||||||||:::||||||||| !!|||||||||||||||||||||||||||||||||
         LysGluLysLeuArgGlnLeuGlu***GluLysArgArgGlnLysIleGluMetTrpAsp
 50232 : aaagagaaattaagacagCTTGAATAAGAAAAAAGGAGACAGAAGATTGAAATGTGGGAT : 50173

   121 : SerMetGlnGluGlyLysSerTyrLysGlyAsnAlaLysLysProGlnGluGluAspSer :   140
         |||||||||||||||||||||||||||||||||.!!!:!:!!||||||||||||||||||
         SerMetGlnGluGlyLysSerTyrLysGlyAsnThrArgGluProGlnGluGluAspSer
 50172 : AGCATGCAAGAAGGAAAAAGTTATAAAGGAAATACAAGAGAGCCTCAGGAAGAAGACAGT : 50113

   141 : ProGlyProSerThrSerSerValLeu<->LysArgLysSerAspArgLysProLeuArg :   159
         ||||||||||||||||||||||||:!!   ||||||||||||||||||||||||||||||
         ProGlyProSerThrSerSerValIleProLysArgLysSerAspArgLysProLeuArg
 50112 : CCTGGGCCTTCTACTTCATCAGTCATCCCGAAACGAAAATCCGACAGAAAGCCTTTGCGA : 50053

   160 : GlyGlyGlyTyrAsnProLeuSerGlyGluGlyGlyGlyAlaCysSerTrpArgProGly :   179
         |||||||||! !|||||||||||||||||||||||||||.!!||||||||||||||||||
         GlyGlyGlySerAsnProLeuSerGlyGluGlyGlyGlyThrCysSerTrpArgProGly
 50052 : GGAGGAGGTTCCAATCCTTTGTCTGGTGAAGGTGGTGGAACCTGCTCCTGGAGACCTGGA : 49993

   180 : ArgArgGlyProSerSerGlyGlyUnkGly :   189
         ||| !!||||||||||||||||||   |||
         Arg***GlyProSerSerGlyGly***Gly
 49992 : CGCTGAGGACCCTCatctggtggatgaggc : 49961

vulgar: SPP00000024_1.0 0 189 . NIVO01025374.1:subseq(1283219,100530) 50530 49960 - 820 M 149 447 G 0 3 M 40 120
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01025374.1:subseq(1283219,100530)	exonerate:protein2genome:local	gene	49961	50530	820	-	.	gene_id 1 ; sequence SPP00000024_1.0 ; gene_orientation .
NIVO01025374.1:subseq(1283219,100530)	exonerate:protein2genome:local	cds	49961	50530	.	-	.	
NIVO01025374.1:subseq(1283219,100530)	exonerate:protein2genome:local	exon	49961	50530	.	-	.	insertions 3 ; deletions 0
NIVO01025374.1:subseq(1283219,100530)	exonerate:protein2genome:local	similarity	49961	50530	820	-	.	alignment_id 1 ; Query SPP00000024_1.0 ; Align 50531 1 447 ; Align 50081 150 120
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis