genewise output
Score 305.99 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000023_1.0   33 GSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTE              
                     GSCRDKKNCKVVFSQ+ELRKRLTPLQYHVTQEKGTE              
                     GSCRDKKNCKVVFSQEELRKRLTPLQYHVTQEKGTE              
NIVO01040223.1:49991 gttagaaataggttcggcaaccaccctcgacgagag              
                     gcggaaaagatttcaaatgagtcctaaatcaaagca              
                     gatgtagctggctcggaggggaacgactctggagca              


SPP00000023_1.0   69                           AFEGEYTHHKDPGIYKCVVCGTP 
                                               AFEGEYTHHKDPGIYKCVVCGTP 
                                S:S[agt]       AFEGEYTHHKDPGIYKCVVCGTP 
NIVO01040223.1:50099 AGGTAAGGC  Intron 1   CAGTgtgggtaccagcgatatggtgac 
                       <2-----[50101:51714]-2> ctagaacaaaacgtaagttggcc 
                                               ccaaatatcattaacattttata 


SPP00000023_1.0   93 LF                          SETKFDSGS             
                     LF                          SETKFDSGS             
                     LF           K:K[aag]       SETKFDSGS             
NIVO01040223.1:51785 ttAAGTAAGTA  Intron 2   CAGGtgaatgtgt             
                     tt  <2-----[51793:96494]-2> cacatacgc             
                     gt                          aacatccta             


SPP00000023_1.0  105                           WPSFHDVINSEAITFTDDFSYGM 
                                               WPSFHDVINS+A+TFTDDFSYGM 
                               G:G[ggc]        WPSFHDVINSDAVTFTDDFSYGM 
NIVO01040223.1:96523 GGTATGTT  Intron 3   CAGGCtcttcggaatgggataggtttga 
                      <1-----[96524:161685-1>  gcctaattacactctcaatcagt 
                                               gtacccgctttggacatctctgg 


SPP00000023_1.0  129 HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
                     HRVETSCSQ                       CGAHLGHIFDDGPRPTG 
NIVO01040223.1161757 caggaattcGTCAGTG  Intron 4   CAGtggccgcatgggcccag 
                     agtacggca<0-----[161784:17159-0>ggcatgattaagcgccg 
                     cgggccctg                       cttccgctcccattacc 


SPP00000023_1.0  155 KRYCINSAALSFTPADSSGTAEGGSGVASPAQADKAEL            
                     KRYCINSA+LSFT A+SSG   G S   SPA  DK EL            
                     KRYCINSASLSFTAAESSGP-QGDSAGGSPAPGDKTEL            
NIVO01040223.1171646 aattaatgttttagggaagc cggagggacgcggaagc            
                     agagtaccctctcccagggc agagcgggcccgaacat            
                     aaccacgacgtcctagctcc ggctggccgcttcgggg            


//
Making a S in phase 2 intron
Making a K in phase 2 intron
Making a G in phase 1 intron
>NIVO01040223.1:subseq(1504612,221756).pep
GSCRDKKNCKVVFSQEELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTP
LFKSETKFDSGSGWPSFHDVINSDAVTFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRP
TGKRYCINSASLSFTAAESSGPQGDSAGGSPAPGDKTEL
//
>NIVO01040223.1:subseq(1504612,221756).[49991:171756].sp
GGGTCATGTAGGGATAAAAAGAACTGTAAGGTGGTCTTTTCCCAGGAGGAACTGAGGAAG
CGGCTAACACCCCTGCAATACCATGTCACTCAGGAGAAAGGGACCGAAAGTGCCTTCGAA
GGAGAATATACACATCACAAAGATCCTGGAATATACAAATGTGTTGTTTGTGGAACTCCA
TTGTTTAAGTCAGAAACCAAATTTGACTCCGGTTCAGGCTGGCCTTCATTCCACGACGTG
ATCAATTCTGATGCGGTGACATTCACAGATGACTTTTCCTATGGGATGCACAGGGTGGAG
ACCAGCTGCTCTCAGTGCGGTGCTCACCTCGGGCACATTTTCGACGACGGACCTCGTCCA
ACCGGCAAAAGATACTGCATAAACTCGGCATCCTTGTCTTTCACCGCTGCAGAGAGCAGT
GGCCCCCAGGGGGACAGTGCGGGGGGCAGCCCGGCCCCTGGTGACAAGACGGAGCTG
//
NIVO01040223.1:subseq(1504612,221756)	GeneWise	match	49991	171756	305.99	+	.	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
NIVO01040223.1:subseq(1504612,221756)	GeneWise	cds	49991	50100	0.00	+	0	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
NIVO01040223.1:subseq(1504612,221756)	GeneWise	intron	50101	51714	0.00	+	.	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
NIVO01040223.1:subseq(1504612,221756)	GeneWise	cds	51715	51792	0.00	+	1	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
NIVO01040223.1:subseq(1504612,221756)	GeneWise	intron	51793	96494	0.00	+	.	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
NIVO01040223.1:subseq(1504612,221756)	GeneWise	cds	96495	96523	0.00	+	1	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
NIVO01040223.1:subseq(1504612,221756)	GeneWise	intron	96524	161685	0.00	+	.	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
NIVO01040223.1:subseq(1504612,221756)	GeneWise	cds	161686	161783	0.00	+	2	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
NIVO01040223.1:subseq(1504612,221756)	GeneWise	intron	161784	171594	0.00	+	.	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
NIVO01040223.1:subseq(1504612,221756)	GeneWise	cds	171595	171756	0.00	+	0	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
//

genewise output
Score 23.24 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000023_1.0  131 VETSCSQCGAHLGHIF                                  
                     VE+SCS    HLG IF                                  
                     VESSCSHSSKHLGEIF                                  
NIVO01040223.-123668 ggatttcttactggat                                  
                     tagcgcaccaatgatt                                  
                     gacatctccgtgagtt                                  


//
>NIVO01040223.1:subseq(1504612,221756).pep
VESSCSHSSKHLGEIF
//
>NIVO01040223.1:subseq(1504612,221756).[123668:123619].sp
GTGGAAAGCTCATGTTCCCATTCCTCCAAGCATTTGGGAGAGATTTTT
//
NIVO01040223.1:subseq(1504612,221756)	GeneWise	match	123668	123621	23.24	-	.	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
NIVO01040223.1:subseq(1504612,221756)	GeneWise	cds	123668	123621	0.00	-	0	NIVO01040223.1:subseq(1504612,221756)-genewise-prediction-1
//