genewise output Score 288.83 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000022_1.0 9 RGQR-AAPERAARLLWLLRGLTLGTAPRRAVRGQAGGGGPGTGPGLGEA RG R AA + ARLL LRGL L AP RG+A GG G G +A RGLRPAALDVMARLLRALRGLALREAPGWTARGRADCGGLRAGAGSPQA NIVO01003597.1:42418 cgcccggcggagccccgccgcgccggcgtagcgcggtggccggggtccg ggtgccctattcgttgctggtctgaccggccgggcagggtgcgcgccac tgccgcgaccggccggtggcgcccggcggtggcagccccccattacgaa SPP00000022_1.0 57 SLATCELPLAKSEWQKKLTPEQF SL + L+KSEWQKKLTPEQF G:G[ggg] SLTKHQPALSKSEWQKKLTPEQF NIVO01003597.1:42565 GGTAGGCC Intron 1 CAGGGtcaacccgctaagtcaacacgct <1-----[42566:49997]-1> ctcaaacctcagagaaatccaat ttaatggtccgtggggggaaggc SPP00000022_1.0 81 YVTREKGTEP PFSGIYLNNKEAGMYH +VTREKGTEP PFSGIYLNNKE GMYH HVTREKGTEP PFSGIYLNNKEPGMYH NIVO01003597.1:50069 cgaagagagcGTAAGCT Intron 2 CAGctagatcaaagcgatc atcgaagcac<0-----[50099:56045]-0>ctggtataaaacgtaa tcgaaagagg tctgccgtcgaaggtc SPP00000022_1.0 107 CVCCDSPLF SEKKYCSGTGWPSF CVCCDSPLF SEKK+CSGTGWPSF CVCCDSPLF S:S[agc] SEKKFCSGTGWPSF NIVO01003597.1:56094 tgttgacctAGGTGAGAT Intron 3 CAGCtgaatttgagtctt gtggagctt <2-----[56123:62626]-2> caaatgcgcggcct tgtcccgcc tgggcctcgagtgc SPP00000022_1.0 131 SEAHGTSGSDESHTGILRRLDTSLGSARTEVVCKQ SEAHGTSGSDES+TGILRR DTSLG ARTEVVCKQ SEAHGTSGSDESNTGILRRADTSLGLARTEVVCKQ NIVO01003597.1:62670 tggcgatgtggaaagacacggattgcgcagggtac cacagccgcaagacgttggcacctgtcgcattgaa tgtcgctcttgtcggcgattccggaatcagcctgg SPP00000022_1.0 166 CEAHLGHVFPDGPGPNGQRFCINSVA CEAHLGHVFPDGPGP GQRFCINSVA CEAHLGHVFPDGPGPAGQRFCINSVA NIVO01003597.1:62775 GTGGGTG Intron 4 CAGtggccgcgtcggcgcggcattaaagg <0-----[62775:63770]-0>gacatgattcagcgccgagtgtagtc catctctgcctatgttgggcccctgg SPP00000022_1.0 192 LKFKPRK L+FKP+K LRFKPKK NIVO01003597.1:63849 catacaa tgtacaa cgcgaga // Making a G in phase 1 intron Making a S in phase 2 intron >NIVO01003597.1:subseq(1758717,113857).pep RGLRPAALDVMARLLRALRGLALREAPGWTARGRADCGGLRAGAGSPQAGSLTKHQPALS KSEWQKKLTPEQFHVTREKGTEPPFSGIYLNNKEPGMYHCVCCDSPLFSSEKKFCSGTGW PSFSEAHGTSGSDESNTGILRRADTSLGLARTEVVCKQCEAHLGHVFPDGPGPAGQRFCI NSVALRFKPKK // >NIVO01003597.1:subseq(1758717,113857).[42418:63869].sp CGTGGGCTCCGCCCGGCCGCGCTAGACGTCATGGCGCGCCTCCTGCGGGCTCTGCGGGGC CTGGCCCTCCGCGAGGCGCCCGGGTGGACTGCGCGGGGCCGAGCGGACTGCGGCGGCCTC CGCGCAGGTGCTGGATCCCCGCAAGCAGGGTCTCTTACAAAACATCAGCCGGCTCTCTCC AAGAGTGAGTGGCAGAAGAAGCTGACACCAGAGCAGTTCCATGTCACGAGAGAAAAAGGG ACAGAGCCGCCTTTCAGTGGGATCTACCTGAATAACAAGGAACCAGGGATGTATCACTGT GTGTGTTGCGACAGCCCGCTCTTCAGCTCTGAGAAGAAGTTCTGCTCTGGCACGGGATGG CCTTCGTTCTCTGAGGCTCACGGGACCTCTGGCTCTGATGAGAGTAACACGGGGATCCTG AGACGTGCTGACACCTCGTTGGGACTAGCTCGCACAGAGGTCGTCTGTAAGCAGTGCGAA GCTCACCTTGGCCATGTGTTCCCCGATGGACCTGGGCCTGCTGGGCAGAGGTTCTGCATC AACAGTGTGGCGCTCAGGTTCAAGCCAAAGAAA // NIVO01003597.1:subseq(1758717,113857) GeneWise match 42418 63869 288.83 + . NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 NIVO01003597.1:subseq(1758717,113857) GeneWise cds 42418 42565 0.00 + 0 NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 NIVO01003597.1:subseq(1758717,113857) GeneWise intron 42566 49997 0.00 + . NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 NIVO01003597.1:subseq(1758717,113857) GeneWise cds 49998 50098 0.00 + 2 NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 NIVO01003597.1:subseq(1758717,113857) GeneWise intron 50099 56045 0.00 + . NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 NIVO01003597.1:subseq(1758717,113857) GeneWise cds 56046 56122 0.00 + 0 NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 NIVO01003597.1:subseq(1758717,113857) GeneWise intron 56123 62626 0.00 + . NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 NIVO01003597.1:subseq(1758717,113857) GeneWise cds 62627 62774 0.00 + 1 NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 NIVO01003597.1:subseq(1758717,113857) GeneWise intron 62775 63770 0.00 + . NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 NIVO01003597.1:subseq(1758717,113857) GeneWise cds 63771 63869 0.00 + 0 NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 // genewise output Score 17.72 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000022_1.0 178 PGPNGQRFCI PG +G+ FCI PGQSGESFCI NIVO01003597.1-99177 cgcaggatta cgaggagtgt gagtgatctc // >NIVO01003597.1:subseq(1758717,113857).pep PGQSGESFCI // >NIVO01003597.1:subseq(1758717,113857).[99177:99146].sp CCGGGACAGAGTGGGGAAAGTTTCTGTATC // NIVO01003597.1:subseq(1758717,113857) GeneWise match 99177 99148 17.72 - . NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 NIVO01003597.1:subseq(1758717,113857) GeneWise cds 99177 99148 0.00 - 0 NIVO01003597.1:subseq(1758717,113857)-genewise-prediction-1 //