_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 7e-31
 Query name: gi|966002158|ref|XP_004020759.2| PREDICTED: methionine-R-sulfoxide reductase B1 [Ovis aries]
 Query range: 1-115  (total 115)

 Target: /data/www-rg/seblastian_results/858681675/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  52287        52341
 -Exon 2  50442        50590
 -Exon 3  50014        50128
 -Exon 4  48699        48727

 Redox box: no

Query   MSFCSFFGGEIFQNHFEPG <---Intron---> IYVCAKCGYELFSSRSKYAHSSPWPTFTETIHADSVAKRPEHNRPGAIK <---Intron---> 
        ||||||||||||||||||| <   1696bp   > ||||||||||||||||||||||||||||||||||||||||||||||||| <   313bp    > 
Target  MSFCSFFGGEIFQNHFEPG                IYVCAKCGYELFSSRSKYAHSSPWPTFTETIHADSVAKRPEHNRPGAIK                
        atttattgggatcactgcg                atgtgatgtgcttactatgcttctcatagaacggaggaccgcaccggaa                
        tctggttggattaaatac                gtatgcaggaattcggcaacacccgcctcactacagtcagcaaagcgcta                
        ggcccccgcgtcgcctgg                tccgtcgtctgccccccgcacgcggggccgccttctgcggagctgtacag                
                                                                                                            

Query   VSCGRCGNGLGHA-RTEAPKRGQSRFUIFSSSLKFIPKG <---Intron---> EETSASQGQ
        ||||||||||||    / ||||||||||||||||||||| <   1286bp   > |||||||||
Target  VSCGRCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFIPKG                EETSASQGQ
        gttgatgagcgcgtcaggcacgctcttataattatacag                ggatgtcgc
        tcgggggagtgaattaagcaggacgtgttggctattca                gaaccccaga
        actcgtccggccgcgctccgcagcccatccccggccta                taaccccgag
                                  *                                     
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 443 ; UGA-SECIS: 506

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 48255 - 48185
 Found by:  Infernal (score=35.96) Covels (score=29.87)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -23.34
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .({((((((---....{[[{(({((((((((.....-.........))))))))}))}]]}..--..-.))))))}).
 target  CCCGGUCAC---UCUAUGAUUCUCUCUGGCUAAACC-CUUGCAGGCGGCCAGAGUGGUGAUGA--CC-UGUGACCCGC
                         ****           ^^^                       ****