genewise output
Score 17.06 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000021_1.0   39 HSSPWPAFTETIHADSVAKRP                             
                     H  PWP +T    +   A+ P                             
                     HGKPWPELTALSSSPEGARTP                             
NIVO01014683.1:97773 cgactcgtagctttcgggaac                             
                     agacgcatcctccccagcgcc                             
                     tcacgtgattgcatagtcgtc                             


//
>NIVO01014683.1:subseq(1238561,102341).pep
HGKPWPELTALSSSPEGARTP
//
>NIVO01014683.1:subseq(1238561,102341).[97773:97835].sp
CATGGCAAACCCTGGCCTGAGTTAACTGCTCTGTCCTCATCTCCAGAGGGTGCCAGGACT
CCC
//
NIVO01014683.1:subseq(1238561,102341)	GeneWise	match	97773	97835	17.06	+	.	NIVO01014683.1:subseq(1238561,102341)-genewise-prediction-1
NIVO01014683.1:subseq(1238561,102341)	GeneWise	cds	97773	97835	0.00	+	0	NIVO01014683.1:subseq(1238561,102341)-genewise-prediction-1
//

genewise output
Score 203.71 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000021_1.0    1 MSFCSFFGGEVFQNHFEP                          VYVCA 
                     MSFCSFFGGE+FQNHFEP                          +YVCA 
                     MSFCSFFGGEIFQNHFEP          G:G[ggt]        IYVCA 
NIVO01014683.1-52341 atttattgggatcactgcGGTACGAT  Intron 1   CAGGTatgtg 
                     tctggttggattaaatac <1-----[52286:50591]-1>  tatgc 
                     ggcccccgcgtcgcctgg                          ccgtc 


SPP00000021_1.0   25 KCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALK      
                     KCGYELFSSRSKYAHSSPWP FTETIHADSVAKRPEHNR  A+K      
                     KCGYELFSSRSKYAHSSPWPTFTETIHADSVAKRPEHNRPGAIK      
NIVO01014683.1-50573 atgtgcttactatgcttctcatagaacggaggaccgcaccggaa      
                     aggaattcggcaacacccgcctcactacagtcagcaaagcgcta      
                     gtctgccccccgcacgcggggccgccttctgcggagctgtacag      


SPP00000021_1.0   69                        VSCGKCGNGLGHEFLNDGPKPGQSRF 
                                            VSCG+CGNGLGHEFLNDGPK GQSRF 
                                            VSCGRCGNGLGHEFLNDGPKRGQSRF 
NIVO01014683.1-50441 GTGGGTG  Intron 2   CAGgttgatgagcgcgtcaggcacgctct 
                     <0-----[50441:50129]-0>tcgggggagtgaattaagcaggacgt 
                                            actcgtccggccgcgctccgcagccc 


SPP00000021_1.0   95 XIFSSSLKFVPKG                                     
                     XIFSSSLKF+PKG                                     
                     XIFSSSLKFIPKG                                     
NIVO01014683.1-50050 tataattatacag                                     
                     gttggctattcag                                     
                     atccccggcctat                                     


//
Making a G in phase 1 intron
>NIVO01014683.1:subseq(1238561,102341).pep
MSFCSFFGGEIFQNHFEPGIYVCAKCGYELFSSRSKYAHSSPWPTFTETIHADSVAKRPE
HNRPGAIKVSCGRCGNGLGHEFLNDGPKRGQSRFXIFSSSLKFIPKG
//
>NIVO01014683.1:subseq(1238561,102341).[52341:50010].sp
ATGTCGTTCTGCAGCTTCTTCGGGGGCGAGATTTTCCAGAACCACTTTGAGCCGGGTATC
TACGTGTGTGCCAAGTGTGGCTATGAGCTCTTCTCCAGCCGCTCCAAGTACGCACACTCG
TCCCCGTGGCCGACGTTCACCGAGACCATCCATGCTGACAGTGTGGCCAAGCGGCCAGAG
CACAATCGGCCTGGAGCCATAAAGGTATCCTGTGGCAGGTGTGGCAACGGGCTGGGCCAC
GAGTTCCTGAACGATGGCCCCAAGCGCGGACAGTCCCGCTTCTGAATTTTCAGCAGCTCC
TTGAAGTTCATCCCTAAAGGT
//
NIVO01014683.1:subseq(1238561,102341)	GeneWise	match	52341	50012	203.71	-	.	NIVO01014683.1:subseq(1238561,102341)-genewise-prediction-1
NIVO01014683.1:subseq(1238561,102341)	GeneWise	cds	52341	52287	0.00	-	0	NIVO01014683.1:subseq(1238561,102341)-genewise-prediction-1
NIVO01014683.1:subseq(1238561,102341)	GeneWise	intron	52286	50591	0.00	-	.	NIVO01014683.1:subseq(1238561,102341)-genewise-prediction-1
NIVO01014683.1:subseq(1238561,102341)	GeneWise	cds	50590	50442	0.00	-	2	NIVO01014683.1:subseq(1238561,102341)-genewise-prediction-1
NIVO01014683.1:subseq(1238561,102341)	GeneWise	intron	50441	50129	0.00	-	.	NIVO01014683.1:subseq(1238561,102341)-genewise-prediction-1
NIVO01014683.1:subseq(1238561,102341)	GeneWise	cds	50128	50012	0.00	-	0	NIVO01014683.1:subseq(1238561,102341)-genewise-prediction-1
//