Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../SelR1-human.fa -t SelR1-NIVO01014683.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000021_1.0 # Protein # Methionine-R-sufoxide reductase 1 (SelR1) # Homo sapiens # Complete
        Target: NIVO01014683.1:subseq(1238561,102341) Ammotragus lervia isolate NAZ scaffold3917_len1934570_cov72, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 567
   Query range: 0 -> 115
  Target range: 52341 -> 48701

     1 : MetSerPheCysSerPhePheGlyGlyGluValPheGlnAsnHisPheGluPro{G}  > :    19
         ||||||||||||||||||||||||||||||:!!|||||||||||||||||||||{|}   
         MetSerPheCysSerPhePheGlyGlyGluIlePheGlnAsnHisPheGluPro{G}++ 
 52341 : ATGTCGTTCTGCAGCTTCTTCGGGGGCGAGATTTTCCAGAACCACTTTGAGCCG{G}gt. : 52284

    20 : >>> Target Intron 1 >>>>  {ly}ValTyrValCysAlaLysCysGlyTyrGlu :    29
                 1696 bp           {||}:!!|||||||||||||||||||||||||||
                                 ++{ly}IleTyrValCysAlaLysCysGlyTyrGlu
 52283 : ........................ag{GT}ATCTACGTGTGTGCCAAGTGTGGCTATGAG : 50561

    30 : LeuPheSerSerArgSerLysTyrAlaHisSerSerProTrpProAlaPheThrGluThr :    49
         |||||||||||||||||||||||||||||||||||||||||||||.!!||||||||||||
         LeuPheSerSerArgSerLysTyrAlaHisSerSerProTrpProThrPheThrGluThr
 50560 : CTCTTCTCCAGCCGCTCCAAGTACGCACACTCGTCCCCGTGGCCGACGTTCACCGAGACC : 50501

    50 : IleHisAlaAspSerValAlaLysArgProGluHisAsnArgSerGluAlaLeuLys  > :    69
         |||||||||||||||||||||||||||||||||||||||||| !!! !|||:!!|||   
         IleHisAlaAspSerValAlaLysArgProGluHisAsnArgProGlyAlaIleLys++ 
 50500 : ATCCATGCTGACAGTGTGGCCAAGCGGCCAGAGCACAATCGGCCTGGAGCCATAAAGgt. : 50439

    70 : >>> Target Intron 2 >>>>  ValSerCysGlyLysCysGlyAsnGlyLeuGlyH :    80
                  313 bp           ||||||||||||!:!|||||||||||||||||||
                                 ++ValSerCysGlyArgCysGlyAsnGlyLeuGlyH
 50438 : ........................agGTATCCTGTGGCAGGTGTGGCAACGGGCTGGGCC : 50095

    81 : isGluPheLeuAsnAspGlyProLysProGlyGlnSerArgPheUnkIlePheSerSerS :   100
         ||||||||||||||||||||||||||! !|||||||||||||||   |||||||||||||
         isGluPheLeuAsnAspGlyProLysArgGlyGlnSerArgPhe***IlePheSerSerS
 50094 : ACGAGTTCCTGAACGATGGCCCCAAGCGCGGACAGTCCCGCTTCTGAATTTTCAGCAGCT : 50035

   101 : erLeuLysPheValProLys{G}  >>>> Target Intron 3 >>>>  {ly}LysG :   109
         |||||||||||:!!||||||{|}           1286 bp           {||}:!!|
         erLeuLysPheIleProLys{G}++                         ++{ly}GluG
 50034 : CCTTGAAGTTCATCCCTAAA{G}gt.........................ag{gt}GAAG : 48722

   110 : luThrSerAlaSerGlnGly :   115
         ||||||||||||||||||||
         luThrSerAlaSerGlnGly
 48721 : AAACCTCCGCCTCCCAGGGA : 48702

vulgar: SPP00000021_1.0 0 115 . NIVO01014683.1:subseq(1238561,102341) 52341 48701 - 567 M 18 54 S 0 1 5 0 2 I 0 1692 3 0 2 S 1 2 M 49 147 5 0 2 I 0 309 3 0 2 M 38 114 S 0 1 5 0 2 I 0 1282 3 0 2 S 1 2 M 8 24
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	gene	48702	52341	567	-	.	gene_id 1 ; sequence SPP00000021_1.0 ; gene_orientation +
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	cds	52287	52341	.	-	.	
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	exon	52287	52341	.	-	.	insertions 0 ; deletions 0
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	splice5	52285	52286	.	-	.	intron_id 1 ; splice_site "GT"
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	intron	50591	52286	.	-	.	intron_id 1
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	splice3	50591	50592	.	-	.	intron_id 0 ; splice_site "AG"
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	cds	50442	50590	.	-	.	
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	exon	50442	50590	.	-	.	insertions 0 ; deletions 0
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	splice5	50440	50441	.	-	.	intron_id 2 ; splice_site "GT"
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	intron	50129	50441	.	-	.	intron_id 2
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	splice3	50129	50130	.	-	.	intron_id 1 ; splice_site "AG"
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	cds	50014	50128	.	-	.	
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	exon	50014	50128	.	-	.	insertions 0 ; deletions 0
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	splice5	50012	50013	.	-	.	intron_id 3 ; splice_site "GT"
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	intron	48728	50013	.	-	.	intron_id 3
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	splice3	48728	48729	.	-	.	intron_id 2 ; splice_site "ag"
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	cds	48702	48727	.	-	.	
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	exon	48702	48727	.	-	.	insertions 0 ; deletions 0
NIVO01014683.1:subseq(1238561,102341)	exonerate:protein2genome:local	similarity	48702	52341	567	-	.	alignment_id 1 ; Query SPP00000021_1.0 ; Align 52342 1 54 ; Align 50589 20 147 ; Align 50129 69 114 ; Align 48726 108 24
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis