------- SECIS element -- id:1 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 56666 - 56732
 Found by:  Infernal (score=29.41) Covels (score=13.38)
 Stem2 length = 9   Apical loop length = 10   Insertion in stem2 = 1, 0
 Free Energy = -9.3
 Type = 1

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...((((((---....([[{(((({(.((((......--.-----...)))))}))))}]])..--....))))))...
 target  UUUCCAUAG---UCAAUGAUGGUUCAAUAGGCAAACC--A-----GGUCCUAUAAACCUGAAUU--UUUUUUAUGGUUA
                         ****            ^^^                       ****                 

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 56229 - 56300
 Found by:  Infernal (score=28.33) Covels (score=28.55)
 Stem2 length = 10   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -11.34
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ...({((((.--....{[[{((((((((({(.....-.........)})))))))))}]]}..--..-.))))})...
 target  UCUACUUGCA--UUAAUGAGAACAGAAACGUAAACU-AUAACCUAGGGGUUUCUGUUGGAUAG--UU-GGCAACUUAG
                         ****           ^^^                       ****                 

------- SECIS element -- id:3 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 467866 - 467944
 Found by:  Infernal (score=11.16) Covels (score=1.97)
 Stem2 length = 8   Apical loop length = 16   Insertion in stem2 = 2, 0
 Free Energy = -7.01
 Type = 1

         ..(((((((.........((((((((((((..(((...............)))))))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggc--ccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         (({(((((((........{[[(((((({{(..((......-..........)))}}))))))]]}..--...)))))))}))
 target  UCGGUUUUGGUAGCUUAGUGAGGCUGAAUUGACUUAAUUU-AAAAACUGGUGGAUAUUAGCUGAUGA--GCUUCAGAAUGGA
                           ****             ^^                        ****                 

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 76948 - 76864
 Found by:  Infernal (score=10.87) Covels (score=4.26)
 Stem2 length = 9   Apical loop length = 23   Insertion in stem2 = 0, 1
 Free Energy = -6.3
 Type = 1

         ..(((((((.......(((((((((((((((.......................))))))))).))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC--------cuuuuuggggcgggccagg-cCuGAUGuuuuuucaugaccggc
         .({((({(((......{[[{(((({((({[(.......................)]})))}).)))}]]}..--...)))})))}).
 target  AUCCCUCACCAUUCCAUGAUGGCUCAGUGGUAAAGAAUCUGGCUGCCGAUGCAGGAGACUCAGGUUUGAUCC--CUAGGUCAGGUAG
                         ****           ^^^                                ****                 

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 40404 - 40480
 Found by:  Infernal (score=10.82) Covels (score=7.7)
 Stem2 length = 11   Apical loop length = 14   Insertion in stem2 = 0, 0
 Free Energy = -14.64
 Type = 1

         ..(((((((.......((((((((((.(((((................))))).))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuuuuuucaugaccggc
         .(((((((((--....([[{(({((({(([(((..............)))]))})))}))}]])..--...))))))))).
 target  UGUGGCUUAG--AUCAUGAACUCCUUAUUGCAAAAUUAAGACUUAAAUUGAAGAAAGUAGAGAAAA--CCACUAGGCCAUU
                         ****             ^^                         ****                 

------- SECIS element -- id:6 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 306621 - 306547
 Found by:  Infernal (score=10.44) Covels (score=4.24)
 Stem2 length = 9   Apical loop length = 13   Insertion in stem2 = 0, 2
 Free Energy = -17.82
 Type = 1

         ..(((((((.......((((((((((.(((((................))))).)))))))))).............)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcC-cuuuuuggggcgggc-caggcCuGAUGuu----u-uuucaugaccggc
         ..(((((((---((..([[{(((((((--((..........-----...)).).))))))}]]).........-.)))))))))..
 target  CACAGUAGC---UACGUGACUCACCCC--UGUGAAGCAGCU-----GGCCAUGUGGGUGAUGAGGUUUGUACC-CUAGCUGCUGCU
                         ****             ^^                         ****                      

------- SECIS element -- id:7 -- grade:B ----
 Chromosome = your_sequence Strand = - Positions = 304640 - 304558
 Found by:  Infernal (score=10.15) Covels (score=0.2)
 Stem2 length = 9   Apical loop length = 21   Insertion in stem2 = 0, 0
 Free Energy = -8.79
 Type = 1

         ..(((((((........(((((((((((((((...................))))))))))))))).........)))))))..
 model   uucggucaugcg-UuaAUGAcGgccuggcccuAAAcC----cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         ..((({(((........([[(((((((({((.....................))}))))))))]]).....-...)))})))..
 target  GUAGACCUAAAGAUUCAUGAAGAGUGUUUUGUUCACUCCUGUUUCCCCAUCCUGUAGCAUUCUGAGACAUG-GAGUAGAUCUUC
                          ****                                         ****