genewise output Score 1153.91 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000019_1.0 1 MAVYRAALGASLAAARLLP--LGRCSPSPAPRSTLSGAAMEPAPRWLAG MA RA L ASLA AR P LGR PS A S L+G AMEPAPRWLAG MAALRAVLAASLAEARARPPPLGRRPPS-ARCSALAG-AMEPAPRWLAG NIVO01039759.1:49907 aggccggcggtcgggcgcccccgcccct gcttgtgg gagcgcctcgg tcctgcttccctcacgcgccctgggccc cggcctcg ctacccggtcg gcgccagagctcgacccgggcccccggc ccccggcc cggcgccggcg SPP00000019_1.0 48 LRFDNRALRALPVEAPPPGPEGAPSAPRPVPGACFTRVQPTPLRQPRLV LRFDNRALRALPVE PPPGPEGAPSAPRPVPGACF+R +P PLR+PR+V LRFDNRALRALPVETPPPGPEGAPSAPRPVPGACFSRARPEPLRRPRVV NIVO01039759.1:50048 cctgacgccgccggacccgcgggctgcccgcggttacgccgccccccgg tgtaagctgctctaccccgcagcccccgctcgcgtggcgcactggcgtt gccccccgcggggggggccggccgcgggagcccccccggcgcggggccg SPP00000019_1.0 97 ALSEPALALLGLGAPPAREA------EAEAALFFSGNALLPGAEPAAHC ALSEPALALLGL APPA +A EAE ALFFSGNALLPGAEPAAHC ALSEPALALLGLDAPPAADAAAREAREAEVALFFSGNALLPGAEPAAHC NIVO01039759.1:50195 gctgcgcgccgcggccggggggcggcgggggcttagagcccgggcggct ctcacctcttgtacccccacccgacgacatctttggacttcgcacccag ggggcgggggcgcggccccccccggcgcgtgccccccggggccgccgcc SPP00000019_1.0 140 YCGHQFGQFAGQLGDGAAMYLGEVCTATGERWELQLKGAGPTPFS YCGHQFGQFAGQLGDGAAMYLGEVCT GERWELQLKGAGPTPFS YCGHQFGQFAGQLGDGAAMYLGEVCTEAGERWELQLKGAGPTPFS NIVO01039759.1:50342 ttgcctgctggccgggggatcgggtaggggctgcccagggcactt aggaatgatcgatgagcctatgatgcacgaggatatagcgccctc ccccgccgccgggcccccgcgcggccgccgcggggcgcggcgccc SPP00000019_1.0 185 QADGRKVLRSSIREFLCSEAMFH QADGRKVLRSSIREFLCSEAMFH R:R[aga] QADGRKVLRSSIREFLCSEAMFH NIVO01039759.1:50477 AGGTGTGTT Intron 1 CAGAcgggcagcctaacgtctaggatc <2-----[50479:60852]-2> acaggattgcgtgattggactta ggtccgggcccccgcgccgcgcc SPP00000019_1.0 209 LGVPTTRAGACVTSESTVVRDVFYDGNPKYEQCTVVLRVASTFI LG+PTTRAG+CV+S+STVVRD FYDGNP+ E C VVLR+A TF+ LGIPTTRAGSCVSSQSTVVRDPFYDGNPRPEPCAVVLRLAPTFL NIVO01039759.1:60923 cgacaacggttgttctaggcgcttggacccgctgggcccgcatc tgtcccgcgcgtccaccttgactaagacgcacgctttgtccctt gccccggcccccccgcccgtcccccgcgacggccgggcgccgcc SPP00000019_1.0 253 FGSFEIFKSADEHTGRAGPSVGR FGSFEIFK DEHTGRAGPSVGR R:R[agg] FGSFEIFKPRDEHTGRAGPSVGR NIVO01039759.1:61055 AGGTAAGGC Intron 2 CAGGtgttgatacaggcagcggcagga <2-----[61057:61776]-2> tgctattacgaaacggcgcgtgg caccgccgcacgcgcggcccggg SPP00000019_1.0 277 NDIRVQLLDYVISSFYPEIQAAHASDSVQRNAAFFRE +DIR+Q+LDYVIS+FYPEIQA+H D VQR+AAFFRE DDIRLQMLDYVISTFYPEIQASHPGDPVQRHAAFFRE NIVO01039759.1:61847 ggacccacgtgaaattcgacgtccggcgcacggttcg aatgtattaattgctacataccacgactagaccttga tcccgggccccccccccgcgctccactggatccccgg SPP00000019_1.0 314 VTRRTARMVAEWQCVGFCHGVLNTDN VTRRTAR+VAEWQCVGFCHGVLNTDN VTRRTARLVAEWQCVGFCHGVLNTDN NIVO01039759.1:61958 GTCAGTC Intron 3 CAGgaccagccgggtctggttcggcaaga <0-----[61958:63054]-0>tcggccgttcagagtgtgagttacaa gcgcgcgggtgggtgcccccgccacc SPP00000019_1.0 340 MSILGLTIDYGPFGFLD YDPDHV MSI+GLTIDYGPFGFLD YDP HV MSIVGLTIDYGPFGFLD R:R[agg] YDPGHV NIVO01039759.1:63133 aaaggcaagtgctgtcgAGGTGGGCG Intron 4 CAGGtgcgcg tgttgtctaagctgtta <2-----[63186:63513]-2> aacgat gccggcccccgccccgc tcttcg SPP00000019_1.0 364 CNASDNTGRYAYSKQPEVCRWNLRKLAEALQPELPLELGEAILAEEFDA CNASD GRY+Y KQPEVCRWNL+KLAEAL P LPLEL EAILA+EFDA CNASDAAGRYSYGKQPEVCRWNLQKLAEALDPALPLELAEAILAQEFDA NIVO01039759.1:63533 tagtggggctttgaccggtataccacgggcgcgcccgcgggacgcgtgg gaccaccggacagaacatgggataatcactacctctatcacttcaatac cccccctgccgccggtggcggcggggcgcgccggccggcgccggggccc SPP00000019_1.0 413 EFQRHYLQKMRRKLGLVQVELEEDGALVSKLLETMHLT EF RHYLQKMRRKLGLVQ E E DGALV++LLETMHLT EFGRHYLQKMRRKLGLVQTEQEGDGALVAQLLETMHLT NIVO01039759.1:63680 gtgcctccaaccacgcgcagcgggggcggcccgaacca atggaataatggatgttacaaagagcttcattactatc gccgccggggcgggccgggggggtccggcgcggcgcgc SPP00000019_1.0 451 ADFTNTFYLLSSFPVELESPGLA ADFTN+FYLLSSFP ESP L G:G[ggg] ADFTNSFYLLSSFPAAPESPDLD NIVO01039759.1:63794 GGTGAGTG Intron 5 CAGGGggtaatttccattcggcgtcgcg <1-----[63795:67809]-1> catcactattgctccccaccata tccaccccggctcatgggcacgt SPP00000019_1.0 475 EFLARLMEQCASLEELRLAFRPQMDP EFLA + QCASLEELRLAFRPQMDP EFLAAMTAQCASLEELRLAFRPQMDP R:R[cgg] NIVO01039759.1:67881 gtcggaagctgtcggcacgtcccagcCGGTGCGTG Intron 6 attcctccagcctaatgtctgcatac <2-----[67961:68546] gcgtggtagtccgggggtccacggtc SPP00000019_1.0 501 QLSMMLMLAQSNPQLFALMGTRAGIARELERVEQQSRLEQLSAAE QL+MMLMLAQSNPQL+AL+GTRA +ARELERVEQQS+LEQLS AE QLAMMLMLAQSNPQLLALIGTRASLARELERVEQQSQLEQLSEAE NIVO01039759.1:68544 CAGGccgaacacgctaccccgcagacgacgcgcgcggcctccgccaggg -2> atctttttcacacattcttgcgcgtcgatagtaaacataatgaca ggcggcggggacggcgggccgggcgtggggcggggggagggcgcg SPP00000019_1.0 547 LQSRNQGHWADWLQAY ARLDKDL L S+N+ WA WL Y ARL+KD LHSKNRSRWAAWLHDY R:R[agg] ARLEKDR NIVO01039759.1:68683 ccaaaaactggtccgtAGGTGCCCC Intron 7 TAGGgccgagc tagaaggggccgtaaa <2-----[68733:68824]-2> cgtaaag gccgcgccgcggcccc cggggcg SPP00000019_1.0 571 EGAGDAAAWQAEHVRVMHANNPKYVLRNYIAQNAIEAAERGDFSE---- E +GDAA WQAE RVM ANNPKYVLRNYIAQ AIEAAE GDFSE EASGDAATWQAERTRVMRANNPKYVLRNYIAQGAIEAAESGDFSEARAA NIVO01039759.1:68847 ggaggggatcggcacgacgaacatgcaatagcggaggggaggttggagg acggacccgacagcgttgcaacaattgaatcagctaccaggatcacgcc gccccgccggcgcatcgtccccgcgggcctagcctatggctccggagcc SPP00000019_1.0 616 ---------------------------------VRRVLKLLETPYHCEA VRRVLKLLETPY EA CPPPPPQPPRPRASLVVEEAGPQQPPSLSTPLQVRRVLKLLETPYGGEA NIVO01039759.1:68994 tcccccccccccgtcggggggccccctctacccgccgtaccgactgggg gcccccaccgcgcctttaacgcaaccctccctatggttattaccaggac ccgcccatccgctggtgggctcagccgcccggggggggggggctccgga SPP00000019_1.0 632 GAA---TDAEATEA----DGADGRQRSYSSKPPLWAAELCVT AA AEA+EA GA GR+RSYSSKPPLWAAELCVT EAAEPEAAAEASEAAAETGGAAGRRRSYSSKPPLWAAELCVT NIVO01039759.1:69141 ggggcggggggagggggagggggcccttaaaccctgggctga accacacccacgacccacggccggggcaggacctgccatgtc gtcgcggcggccggtagccgaccggcccccgcgcggaggcgg // Making a R in phase 2 intron Making a R in phase 2 intron Making a R in phase 2 intron Making a G in phase 1 intron Making a R in phase 2 intron Making a R in phase 2 intron >NIVO01039759.1:subseq(161102,119275).pep MAALRAVLAASLAEARARPPPLGRRPPSARCSALAGAMEPAPRWLAGLRFDNRALRALPV ETPPPGPEGAPSAPRPVPGACFSRARPEPLRRPRVVALSEPALALLGLDAPPAADAAARE AREAEVALFFSGNALLPGAEPAAHCYCGHQFGQFAGQLGDGAAMYLGEVCTEAGERWELQ LKGAGPTPFSRQADGRKVLRSSIREFLCSEAMFHLGIPTTRAGSCVSSQSTVVRDPFYDG NPRPEPCAVVLRLAPTFLRFGSFEIFKPRDEHTGRAGPSVGRDDIRLQMLDYVISTFYPE IQASHPGDPVQRHAAFFREVTRRTARLVAEWQCVGFCHGVLNTDNMSIVGLTIDYGPFGF LDRYDPGHVCNASDAAGRYSYGKQPEVCRWNLQKLAEALDPALPLELAEAILAQEFDAEF GRHYLQKMRRKLGLVQTEQEGDGALVAQLLETMHLTGADFTNSFYLLSSFPAAPESPDLD EFLAAMTAQCASLEELRLAFRPQMDPRQLAMMLMLAQSNPQLLALIGTRASLARELERVE QQSQLEQLSEAELHSKNRSRWAAWLHDYRARLEKDREASGDAATWQAERTRVMRANNPKY VLRNYIAQGAIEAAESGDFSEARAACPPPPPQPPRPRASLVVEEAGPQQPPSLSTPLQVR RVLKLLETPYGGEAEAAEPEAAAEASEAAAETGGAAGRRRSYSSKPPLWAAELCVT // >NIVO01039759.1:subseq(161102,119275).[49907:69266].sp ATGGCCGCGCTCCGCGCAGTGCTAGCGGCCTCTCTCGCGGAAGCCCGCGCCCGGCCGCCG CCCCTCGGCCGCCGCCCGCCGTCCGCCCGCTGCTCCGCGTTGGCCGGCGCCATGGAGCCC GCGCCCCGCTGGCTGGCCGGGCTGCGCTTCGACAACCGCGCCCTGCGCGCGCTGCCGGTG GAGACGCCGCCGCCCGGCCCGGAGGGCGCCCCGTCCGCGCCGCGGCCAGTGCCCGGCGCC TGCTTCAGCCGCGCGCGGCCCGAGCCCCTGCGGCGGCCGCGCGTCGTGGCGCTGTCGGAG CCCGCGCTGGCGCTGCTGGGCCTGGACGCGCCGCCCGCCGCCGACGCCGCCGCCCGCGAG GCGCGCGAGGCCGAGGTTGCGCTCTTCTTCAGCGGCAACGCGCTGCTGCCGGGCGCCGAG CCCGCCGCGCACTGCTACTGCGGCCACCAGTTCGGCCAGTTCGCCGGGCAGCTGGGCGAC GGCGCCGCCATGTACCTGGGCGAGGTGTGCACCGAGGCCGGCGAGCGCTGGGAGCTGCAG CTCAAGGGCGCGGGGCCCACGCCCTTCTCCAGACAGGCGGATGGCCGCAAGGTGCTGCGC TCCAGCATCCGCGAGTTCCTGTGCAGCGAGGCCATGTTCCACCTGGGCATCCCCACCACG CGGGCCGGCTCCTGCGTCTCCTCCCAGTCCACCGTCGTGCGTGACCCCTTCTACGACGGG AACCCGCGACCCGAGCCGTGCGCCGTGGTGCTGCGCCTGGCCCCCACGTTCCTCAGGTTC GGATCCTTCGAGATCTTCAAGCCCAGAGACGAGCACACGGGCCGGGCGGGCCCCAGCGTG GGGAGGGATGACATCCGCCTGCAGATGCTCGACTACGTCATCAGCACCTTCTACCCCGAG ATCCAGGCCTCTCACCCCGGAGACCCTGTGCAGAGACATGCCGCCTTCTTCCGGGAGGTG ACCCGGCGCACGGCCCGGCTGGTGGCTGAGTGGCAGTGTGTGGGCTTCTGCCACGGCGTG CTCAACACAGACAACATGAGCATCGTGGGGCTCACCATCGACTACGGGCCCTTCGGCTTC CTGGACAGGTATGACCCTGGTCACGTGTGCAACGCCTCCGACGCCGCTGGGCGCTACTCG TACGGCAAGCAGCCTGAGGTGTGCAGGTGGAACCTGCAGAAGCTGGCCGAGGCCCTGGAC CCCGCGCTGCCCCTCGAGCTGGCCGAGGCCATCCTGGCGCAGGAGTTCGACGCCGAGTTC GGCCGGCACTACCTGCAGAAGATGCGCCGGAAGCTGGGCCTCGTGCAGACGGAGCAGGAG GGGGATGGCGCCCTGGTGGCCCAGCTCCTGGAGACCATGCACCTGACCGGGGCTGACTTC ACAAACTCCTTCTACCTGCTGAGCTCTTTCCCAGCTGCGCCGGAGTCCCCAGACCTGGAT GAGTTCCTGGCTGCGATGACTGCACAGTGTGCCTCCCTGGAGGAGCTGAGGCTTGCCTTC CGACCCCAGATGGATCCCCGGCAGCTGGCCATGATGCTCATGCTGGCGCAGTCAAACCCG CAGCTCCTGGCGCTGATCGGCACGCGGGCGAGCCTGGCTCGGGAGCTGGAGCGCGTGGAG CAGCAGTCGCAGCTAGAGCAGCTGAGCGAGGCCGAGCTGCACAGCAAGAACAGGAGCCGC TGGGCCGCGTGGCTCCACGACTACAGGGCCCGGCTGGAGAAGGACCGGGAGGCCAGCGGC GACGCGGCCACCTGGCAGGCCGAGCGCACACGTGTCATGCGTGCCAACAACCCCAAGTAC GTGCTGAGGAACTACATTGCACAGGGCGCCATTGAAGCTGCGGAGAGCGGTGACTTCTCG GAGGCAAGGGCCGCCTGCCCCCCGCCCCCCCCCCAACCTCCCCGCCCGCGCGCTTCGCTG GTTGTGGAGGAGGCCGGTCCCCAACAGCCCCCCTCGCTCTCCACCCCGCTGCAGGTGCGG CGGGTGTTGAAGCTGCTGGAGACCCCTTACGGCGGGGAGGCAGAGGCTGCCGAGCCCGAG GCGGCCGCGGAGGCCAGCGAGGCGGCTGCAGAGACCGGCGGGGCAGCCGGCCGGCGGCGC TCCTACAGCAGCAAGCCCCCGCTCTGGGCGGCAGAGCTGTGCGTGACG // NIVO01039759.1:subseq(161102,119275) GeneWise match 49907 69266 1200.83 + . NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise cds 49907 50478 0.00 + 0 NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise intron 50479 60852 0.00 + . NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise cds 60853 61056 0.00 + 1 NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise intron 61057 61776 0.00 + . NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise cds 61777 61957 0.00 + 1 NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise intron 61958 63054 0.00 + . NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise cds 63055 63185 0.00 + 0 NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise intron 63186 63513 0.00 + . NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise cds 63514 63794 0.00 + 1 NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise intron 63795 67809 0.00 + . NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise cds 67810 67960 0.00 + 2 NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise intron 67961 68546 0.00 + . NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise cds 68547 68732 0.00 + 1 NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise intron 68733 68824 0.00 + . NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise cds 68825 69266 0.00 + 1 NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 // genewise output Score 25.15 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000019_1.0 53 RALRALPVEAPPPGPEGAPSAP RA RA P PPP P AP AP RADRARPGPPPPPPPPRAPRAP NIVO01039759.1-37707 cggcgccgcccccccccgccgc gcagcgcgccccccccgccgcc gtcgcgtggcgggcgccgccgc // >NIVO01039759.1:subseq(161102,119275).pep RADRARPGPPPPPPPPRAPRAP // >NIVO01039759.1:subseq(161102,119275).[37707:37640].sp CGGGCTGACCGGGCCCGGCCTGGGCCGCCCCCGCCGCCGCCCCCGCCCCGCGCGCCCCGC GCGCCC // NIVO01039759.1:subseq(161102,119275) GeneWise match 37707 37642 25.15 - . NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 NIVO01039759.1:subseq(161102,119275) GeneWise cds 37707 37642 0.00 - 0 NIVO01039759.1:subseq(161102,119275)-genewise-prediction-1 //