------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = + Positions = 65559 - 65632 Found by: Infernal (score=38.62) Covels (score=31.65) Stem2 length = 11 Apical loop length = 10 Insertion in stem2 = 0, 0 Free Energy = -22.19 Type = 1 ..(((((((.......(((((((((((((((...............)))))))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc ..(((((((.......{[[{(((((((((((........-----..)))))))))))}]]}......-...))))))).. target CCAAGCAGCCGCCCCAUGAUGGCUGGAUCUGAAAGCUUA-----GGUGGAUCCAGCUUGAUGUCUUU-GCAGUUGCUUCU **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = + Positions = 76711 - 76782 Found by: Infernal (score=11.63) Covels (score=3.08) Stem2 length = 7 Apical loop length = 14 Insertion in stem2 = 0, 0 Free Energy = -4.54 Type = 1 ..(((((((.......(((((((((((((((..................))))))))))))))).........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc .....((((---....{[[{(({(({({((------..............))})}))}))}]]}.....-...))))..... target UUGCAGGAG---UGUAUGAUGGAAUUUUGG------AAGCAGUGCAGUGGCCCAUGUCUCUGACACUUU-UCUCUCCCUGGU **** ^^ ****