genewise output Score 1029.11 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000018_1.0 1 MGRARPGQRGPPSPGPAAQPPAPPRRRARSLALLGALLA-AAAAAAVRV MGR RPG+RGPP PGPAA PPAPP RRAR+LALLGALLA AAAAAA R MGRTRPGERGPPGPGPAA-PPAPPPRRARALALLGALLAAAAAAAAARA NIVO01052487.1:49141 agcaccggcgccgcgcgg ccgcccccgcgcgccggccgggggggggcg tggcgcgaggccgcgccc ccccccggcgctcttgcttcccccccccgc gcgcggcgcgtgcccccg gcgcggcccccgggcgggccccgcccccgc SPP00000018_1.0 49 CARHAEAQAAARQ ELALKTLGTDGLF AR++EAQAAARQ + ALKTLGT+GLF FARYSEAQAAARQ DSALKTLGTEGLF NIVO01052487.1:49285 tgctaggcgggacGTCCGAG Intron 1 CAGgtgcaacgaggct tcgagacacccga<0-----[49324:49987]-0>acctactgcagtt cccccgcggcggg taagacggaaccc SPP00000018_1.0 75 LFSSLDTDGDMYISPEEFKPIAEKLT LFSSLDTD DMYISPEEFKPIAEKLT LFSSLDTDRDMYISPEEFKPIAEKLT G:G[gga] NIVO01052487.1:50027 ctttcgagcgataacggtacaggacaGGTACCAG Intron 2 ttcctacagatatgcaatactcaatc <1-----[50106:54388] ccccgctcgcgccccggcgcctggga SPP00000018_1.0 101 SCSVTQTGVQWCSHSSLQPQLPWLNXSSCLSLLRSTPAASCEEE S +++ G S+ L L S P A+ EEE SKALSSKGGP---------------LSAGLCLTGSIPTANYEEE NIVO01052487.1:54386 TAGGAaagcttaggc ctggctcagtacagatggg -1> gactccaggc tccgtgtcgctcccaaaaa tgcggtgaac gctcgtcaggttgcccgag SPP00000018_1.0 146 ELPPDPSEETLTIEARFQPLLPETMTKSKDGFLG ELPPDPSEETLTIEARFQPLLPE+MTKSKDGFLG ELPPDPSEETLTIEARFQPLLPESMTKSKDGFLG NIVO01052487.1:54478 gcccgcaggacaaggctcccccgtaaaaaggtcg atccacgaactctacgtacttcactcagaagttg ggctcccggtccaacacgtgctgcgcgcatgcag SPP00000018_1.0 180 VSRLALSGLRNWTAAASPSAVFATRH VSRLALSGLRNWT AASPSAVFA RH VSRLALSGLRNWTTAASPSAVFAARH NIVO01052487.1:54580 GTAAGTT Intron 3 CAGgtccgctgccataaggtcaggtggcc <0-----[54580:57322]-0>tcgtctcgtgagccccccgcttccga cccgcatccccgcgacgcccgtcccc SPP00000018_1.0 206 FQPFLPPPGQ-ELGEPWWIIPSELSMFTGYLSNNRFYPPPPKGKE F+PFLPP G ELGEPWWIIPSELS+FTGYLSNNRFYPPPPKGKE FRPFLPPRGHVELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKE NIVO01052487.1:57401 tcctccccgcggcggcttaacagcagtagtctaacttccccagag tgcttccggatatgacggttcgatgttcgatcaagtaccccagaa cgcccgcgccgggtgcggccctagccccccgccccccaggcgcgg SPP00000018_1.0 250 VIIHRLLSMFHPRPFVKTRFAPQGAV VIIHRLLSMFHPRPFVKTRFAPQGAV VIIHRLLSMFHPRPFVKTRFAPQGAV NIVO01052487.1:57536 GTGAGGG Intron 4 CAGgaaccccaatcccctgaactgccggg <0-----[57536:57713]-0>tttagttgttacgcttacgtccagct ccccgtgcgccagccggcttctggcg SPP00000018_1.0 276 ACLTAISDFYYTVMF IHAEFQLS ACLTAISDFYYTVMF IHAEFQLS ACLTAISDFYYTVMF R:R[cgc] IHAEFQLS NIVO01052487.1:57792 gtcagaagtttagatCGGTGAGGG Intron 5 CAGCacggtcca cgtcctgataacttt <2-----[57839:58413]-2> tacatatg ccgcccccctccggc cccgcgcc SPP00000018_1.0 300 EPPDFPFWFSPAQFTGHIILSKDATHVRDFRLFVPNH EPPDFPFWFSP QFTGHIILSKDATHVRDFRLFVPNH EPPDFPFWFSPGQFTGHIILSKDATHVRDFRLFVPNH NIVO01052487.1:58439 gccgtcttttcgctagcaactaggacgcgtcctgcac accatctgtccgatcgatttcaaccatgatgtttcaa gccccccgccccgcccccctcatcccctccgccgccc SPP00000018_1.0 337 SLNVDMEWLYGASESSNMEVDIG SLNVDMEWLYGASESSNMEVDIG R:R[agg] SLNVDMEWLYGASESSNMEVDIG NIVO01052487.1:58550 AGGTGAGAG Intron 6 CAGGtcaggagtctggagaaaagggag <2-----[58552:60123]-2> ctatatagtagcgaggatatatg tgtgcggggtgccgcccgggccc SPP00000018_1.0 361 YIPQ MELEATGPSVPSVILDEDGSMI YIPQ MELEA GPSVPSVILDEDG++I YIPQ MELEALGPSVPSVILDEDGNLI NIVO01052487.1:60194 taccGTGAGCG Intron 7 CAGagcggcgctgctgacggggaca atca<0-----[60206:60823]-0>tatactgcctcctttaaagatt cacg ggggggccagccgcgcgtccgc SPP00000018_1.0 387 DSHLPSGEPLQFVFEEIKWQQELSWEEAARRLEVAMYPFKK DS LPSGEPLQFVFEEI+WQQELSWEEAARRLEVAMYPFKK DSRLPSGEPLQFVFEEIQWQQELSWEEAARRLEVAMYPFKK NIVO01052487.1:60890 gaccctggccctgtggactccgcatggggcccgggatctaa aggtccgactatttaatagaaatggaaccggtatctactaa cccgcaggccgtgtggcggggggcgggacgcgggcgcccgg SPP00000018_1.0 428 VSYLPFTEAFDRAKAENKLVHSILLW V+YLPFTEAFD+AKA+NKLVHSILLW VTYLPFTEAFDQAKAKNKLVHSILLW NIVO01052487.1:61013 GTGAAGC Intron 8 CAGgatcctaggtgcgagaaacgctacct <0-----[61013:61384]-0>tcatctcactaacacaaattactttg cccggccgctcacgcgcgggcacggg SPP00000018_1.0 454 GALDDQSCX SGRTLRETVLESSP GALDDQSCX SGRTLRETVLESSP GALDDQSCX G:G[ggt] SGRTLRETVLESSP NIVO01052487.1:61463 ggcggctttGGTGAGGA Intron 9 CAGGTtgcaccgagcgatc gctaaacgg <1-----[61491:62556]-1> cggctgacttagcc gcgccgcca aggtcgggcgatgc SPP00000018_1.0 478 ILTLLNESFISTWSLVKELEELQ NNQ IL LLNESFISTWSLVKELE+LQ NNQ ILALLNESFISTWSLVKELEDLQ NNQ NIVO01052487.1:62601 acgccagataaattcgagcggccGTGAGTG Intron 10 CAGaac ttcttaagttgcgcttaataata<0-----[62670:62760]-0>aaa ccccccgcccccgcggggggcgg ccg SPP00000018_1.0 504 ENSSHQKLAGLHLEKYSFPVEMMICLPNGTV EN SHQKLA LHLEKYSFPVEMMICLPNGTV ENPSHQKLASLHLEKYSFPVEMMICLPNGTV NIVO01052487.1:62770 gactccacgacccgatatcggaaatccagag aaccaaatcgtataaagtctatttgtcagct gcaccgggccgcgggccccggggccgctccg SPP00000018_1.0 535 VHHINANYFLDITSVKPEEIESNLFS +HHINANYFLDITS+KPE+IE+++FS IHHINANYFLDITSMKPEDIENHVFS NIVO01052487.1:62863 GTAGGTC Intron 11 CAGaccaagatttgaataacggagacgta <0-----[62863:64279]-0>taatacaattatcctacaataaattg ccctcccccgccgcggcgctgccccc SPP00000018_1.0 561 FSSTFEDPSTATYMQFLKEGLRRGLPLLQP FSSTFEDPSTATYMQFLKEGLRRGLPLLQP FSSTFEDPSTATYMQFLKEGLRRGLPLLQP NIVO01052487.1:64358 tttatggctagatactcaggcccgcccccc tccctaacccccatattaagtgggtcttac cgcctacgcgcccggcgggccgccgcccgc // Making a G in phase 1 intron Making a R in phase 2 intron Making a R in phase 2 intron Making a G in phase 1 intron >NIVO01052487.1:subseq(910706,114447).pep MGRTRPGERGPPGPGPAAPPAPPPRRARALALLGALLAAAAAAAAARAFARYSEAQAAAR QDSALKTLGTEGLFLFSSLDTDRDMYISPEEFKPIAEKLTGSKALSSKGGPLSAGLCLTG SIPTANYEEEELPPDPSEETLTIEARFQPLLPESMTKSKDGFLGVSRLALSGLRNWTTAA SPSAVFAARHFRPFLPPRGHVELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKEVIIHR LLSMFHPRPFVKTRFAPQGAVACLTAISDFYYTVMFRIHAEFQLSEPPDFPFWFSPGQFT GHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEALGPSV PSVILDEDGNLIDSRLPSGEPLQFVFEEIQWQQELSWEEAARRLEVAMYPFKKVTYLPFT EAFDQAKAKNKLVHSILLWGALDDQSCXGSGRTLRETVLESSPILALLNESFISTWSLVK ELEDLQNNQENPSHQKLASLHLEKYSFPVEMMICLPNGTVIHHINANYFLDITSMKPEDI ENHVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQP // >NIVO01052487.1:subseq(910706,114447).[49141:64447].sp ATGGGCCGGACCCGGCCGGGCGAGCGCGGGCCTCCGGGCCCCGGCCCCGCCGCGCCGCCC GCGCCCCCGCCGCGCCGCGCCCGCGCCCTGGCGCTGCTCGGGGCGCTGCTCGCCGCCGCC GCGGCCGCCGCCGCCGCCCGGGCCTTCGCCCGCTACAGCGAGGCCCAGGCGGCCGCGAGG CAGGATTCAGCACTGAAAACCCTGGGGACAGAAGGCCTCTTCCTCTTCTCCTCCCTGGAC ACTGACCGGGACATGTACATCAGCCCCGAGGAGTTCAAGCCCATCGCTGAGAAGCTGACA GGAAGTAAGGCCCTGTCGTCTAAGGGAGGACCCCTGTCCGCTGGCCTGTGTCTCACAGGG TCGATTCCTACGGCCAACTACGAGGAAGAGGAGCTGCCCCCTGACCCCAGCGAGGAGACT CTCACCATAGAAGCCCGATTCCAGCCTCTGCTCCCTGAGTCCATGACCAAGAGCAAAGAT GGGTTCCTAGGGGTCTCCCGCCTGGCCCTATCTGGCCTCCGCAACTGGACCACGGCAGCC TCGCCCAGCGCCGTGTTTGCCGCCCGCCACTTCCGGCCCTTCCTCCCGCCCCGGGGCCAC GTGGAGCTGGGTGAGCCCTGGTGGATCATCCCCAGTGAACTGAGCGTCTTCACCGGCTAC CTGTCCAACAACCGCTTCTACCCACCGCCGCCCAAGGGCAAGGAGGTCATCATCCACCGG CTTCTGAGCATGTTCCACCCACGGCCCTTCGTGAAGACCCGTTTTGCCCCTCAGGGGGCC GTGGCCTGCCTGACCGCCATCAGCGACTTCTATTACACCGTGATGTTCCGCATCCACGCC GAGTTCCAGCTCAGCGAGCCCCCCGACTTCCCCTTCTGGTTCTCCCCCGGCCAGTTCACC GGCCACATCATCCTTTCCAAAGATGCCACCCACGTCCGTGACTTCCGGCTCTTCGTGCCC AACCACAGGTCTCTGAATGTGGACATGGAGTGGCTGTATGGGGCCAGCGAGAGCAGCAAC ATGGAGGTGGACATCGGCTACATACCCCAGATGGAGCTGGAGGCGCTGGGCCCCTCAGTG CCCTCCGTGATCCTGGACGAGGATGGCAACCTGATCGACAGCCGCCTGCCCTCAGGGGAG CCCCTCCAGTTTGTGTTTGAGGAGATCCAGTGGCAGCAGGAGCTGAGCTGGGAGGAGGCA GCCCGGCGCCTGGAGGTGGCCATGTACCCCTTCAAGAAGGTCACCTACCTGCCGTTCACC GAGGCCTTTGACCAAGCCAAGGCCAAGAACAAGCTGGTGCACTCAATCCTGCTGTGGGGG GCCCTGGACGACCAGTCCTGCTGAGGTTCAGGGCGGACTCTCCGGGAGACGGTCCTGGAA AGTTCGCCCATCCTCGCCCTCCTCAACGAGAGCTTCATCAGCACCTGGTCCCTGGTGAAG GAGCTGGAGGACCTGCAGAACAACCAGGAGAACCCATCCCACCAGAAGCTGGCCAGCCTG CACCTGGAGAAGTACAGCTTCCCCGTGGAGATGATGATCTGCCTGCCCAATGGCACCGTG ATCCACCACATTAACGCCAACTACTTCTTGGACATCACGTCCATGAAGCCCGAGGACATT GAGAACCACGTCTTCAGCTTCTCGTCCACCTTTGAAGACCCGTCCACGGCCACCTACATG CAGTTCCTGAAGGAGGGCCTCCGGCGCGGCCTGCCCCTCCTCCAGCCC // NIVO01052487.1:subseq(910706,114447) GeneWise match 49141 64447 1043.09 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 49141 49323 0.00 + 0 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 49324 49987 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 49988 50105 0.00 + 0 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 50106 54388 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 54389 54579 0.00 + 2 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 54580 57322 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 57323 57535 0.00 + 0 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 57536 57713 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 57714 57838 0.00 + 0 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 57839 58413 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 58414 58551 0.00 + 1 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 58552 60123 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 60124 60205 0.00 + 1 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 60206 60823 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 60824 61012 0.00 + 0 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 61013 61384 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 61385 61490 0.00 + 0 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 61491 62556 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 62557 62669 0.00 + 2 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 62670 62760 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 62761 62862 0.00 + 0 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise intron 62863 64279 0.00 + . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 64280 64447 0.00 + 0 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 // genewise output Score 25.30 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000018_1.0 370 TGPSVPSVILDEDG TGPS+PSV L++DG TGPSLPSVTLNKDG NIVO01052487.1-59458 agcttctgacaagg cgcctcctctaaag gccggcgacgcgtc // >NIVO01052487.1:subseq(910706,114447).pep TGPSLPSVTLNKDG // >NIVO01052487.1:subseq(910706,114447).[59458:59415].sp ACGGGCCCCTCGTTGCCCTCGGTAACCCTGAACAAGGATGGC // NIVO01052487.1:subseq(910706,114447) GeneWise match 59458 59417 25.30 - . NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 NIVO01052487.1:subseq(910706,114447) GeneWise cds 59458 59417 0.00 - 0 NIVO01052487.1:subseq(910706,114447)-genewise-prediction-1 //