Command line: [exonerate -m p2g --showtargetgff -q ../SelN-human.fa -t SelN-NIVO01052487.1.subseq] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo sapiens # Complete Target: NIVO01052487.1:subseq(910706,114447) Ammotragus lervia isolate NAZ scaffold1691_len2048260_cov73, whole genome shotgun sequence Model: protein2genome:local Raw score: 2204 Query range: 127 -> 590 Target range: 54423 -> 64447 128 : SerSerCysLeuSerLeuLeuArgSerThrProAlaAlaSerCysGluGluGluGluLeu : 147 |||:!! !!|||!!!||| ! !!|||! !|||.!!|||!:!! !||||||||||||||| SerAlaGlyLeuCysLeuThrGlySerIleProThrAlaAsnTyrGluGluGluGluLeu 54424 : TCCGCTGGCCTGTGTCTCACAGGGTCGATTCCTACGGCCAACTACGAGGAAGAGGAGCTG : 54481 148 : ProProAspProSerGluGluThrLeuThrIleGluAlaArgPheGlnProLeuLeuPro : 167 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ProProAspProSerGluGluThrLeuThrIleGluAlaArgPheGlnProLeuLeuPro 54482 : CCCCCTGACCCCAGCGAGGAGACTCTCACCATAGAAGCCCGATTCCAGCCTCTGCTCCCT : 54541 168 : GluThrMetThrLysSerLysAspGlyPheLeuGly >>>> Target Intron 1 > : 180 |||:!!|||||||||||||||||||||||||||||| 2743 bp GluSerMetThrLysSerLysAspGlyPheLeuGly++ 54542 : GAGTCCATGACCAAGAGCAAAGATGGGTTCCTAGGGgt...................... : 54582 181 : >>> ValSerArgLeuAlaLeuSerGlyLeuArgAsnTrpThrAlaAlaAlaSerProS : 198 |||||||||||||||||||||||||||||||||||||||.!!||||||||||||| ++ValSerArgLeuAlaLeuSerGlyLeuArgAsnTrpThrThrAlaAlaSerProS 54583 : ...aggtctcccgcctggCCCTATCTGGCCTCCGCAACTGGACCACGGCAGCCTCGCCCA : 57377 199 : erAlaValPheAlaThrArgHisPheGlnProPheLeuProProProGlyGln<->GluL : 217 ||||||||||||||.!!|||||||||!:!|||||||||||||||! !|||!!. |||| erAlaValPheAlaAlaArgHisPheArgProPheLeuProProArgGlyHisValGluL 57378 : GCGCCGTGTTTGCCGCCCGCCACTTCCGGCCCTTCCTCCCGCCCCGGGGCCACGTGGAGC : 57437 218 : euGlyGluProTrpTrpIleIleProSerGluLeuSerMetPheThrGlyTyrLeuSerA : 237 ||||||||||||||||||||||||||||||||||||||:!:||||||||||||||||||| euGlyGluProTrpTrpIleIleProSerGluLeuSerValPheThrGlyTyrLeuSerA 57438 : TGGGTGAGCCCTGGTGGATCATCCCCAGTGAACTGAGCGTCTTCACCGGCTACCTGTCCA : 57497 238 : snAsnArgPheTyrProProProProLysGlyLysGlu >>>> Target Intron 2 : 250 |||||||||||||||||||||||||||||||||||||| 178 bp snAsnArgPheTyrProProProProLysGlyLysGlu++ 57498 : ACAACCGCTTCTACCCACCGCCGCCCAAGGGCAAGGAGgt.................... : 57538 251 : >>>> ValIleIleHisArgLeuLeuSerMetPheHisProArgProPheValLysTh : 267 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ++ValIleIleHisArgLeuLeuSerMetPheHisProArgProPheValLysTh 57539 : .....agGTCATCATCCACCGGCTTCTGAGCATGTTCCACCCACGGCCCTTCGTGAAGAC : 57765 268 : rArgPheAlaProGlnGlyAlaValAlaCysLeuThrAlaIleSerAspPheTyrTyrTh : 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| rArgPheAlaProGlnGlyAlaValAlaCysLeuThrAlaIleSerAspPheTyrTyrTh 57766 : CCGTTTTGCCCCTCAGGGGGCCGTGGCCTGCCTGACCGCCATCAGCGACTTCTATTACAC : 57825 288 : rValMetPhe{Ar} >>>> Target Intron 3 >>>> {g}IleHisAlaGluPh : 296 ||||||||||{||} 575 bp {|}|||||||||||||| rValMetPhe{Ar}++ ++{g}IleHisAlaGluPh 57826 : CGTGATGTTC{CG}gt.........................ag{C}ATCCACGCCGAGTT : 58427 297 : eGlnLeuSerGluProProAspPheProPheTrpPheSerProAlaGlnPheThrGlyHi : 316 |||||||||||||||||||||||||||||||||||||||||||!.!|||||||||||||| eGlnLeuSerGluProProAspPheProPheTrpPheSerProGlyGlnPheThrGlyHi 58428 : CCAGCTCAGCGAGCCCCCCGACTTCCCCTTCTGGTTCTCCCCCGGCCAGTTCACCGGCCA : 58487 317 : sIleIleLeuSerLysAspAlaThrHisValArgAspPheArgLeuPheValProAsnHi : 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sIleIleLeuSerLysAspAlaThrHisValArgAspPheArgLeuPheValProAsnHi 58488 : CATCATCCTTTCCAAAGATGCCACCCACGTCCGTGACTTCCGGCTCTTCGTGCCCAACCA : 58547 337 : s{Ar} >>>> Target Intron 4 >>>> {g}SerLeuAsnValAspMetGluTr : 345 |{||} 1572 bp {|}||||||||||||||||||||||| s{Ar}++ ++{g}SerLeuAsnValAspMetGluTr 58548 : C{AG}gt.........................ag{G}TCTCTGAATGTGGACATGGAGTG : 60146 346 : pLeuTyrGlyAlaSerGluSerSerAsnMetGluValAspIleGlyTyrIleProGln : 365 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| pLeuTyrGlyAlaSerGluSerSerAsnMetGluValAspIleGlyTyrIleProGln++ 60147 : GCTGTATGGGGCCAGCGAGAGCAGCAACATGGAGGTGGACATCGGCTACATACCCCAGgt : 60206 366 : >>>> Target Intron 5 >>>> MetGluLeuGluAlaThrGlyProSerValPro : 375 618 bp ||||||||||||||| !||||||||||||||| ++MetGluLeuGluAlaLeuGlyProSerValPro 60207 : .........................agATGGAGCTGGAGGCGCTGGGCCCCTCAGTGCCC : 60854 376 : SerValIleLeuAspGluAspGlySerMetIleAspSerHisLeuProSerGlyGluPro : 395 ||||||||||||||||||||||||!:!:!!|||||||||!.!|||||||||||||||||| SerValIleLeuAspGluAspGlyAsnLeuIleAspSerArgLeuProSerGlyGluPro 60855 : TCCGTGATCCTGGACGAGGATGGCAACCTGATCGACAGCCGCCTGCCCTCAGGGGAGCCC : 60914 396 : LeuGlnPheValPheGluGluIleLysTrpGlnGlnGluLeuSerTrpGluGluAlaAla : 415 ||||||||||||||||||||||||:!!||||||||||||||||||||||||||||||||| LeuGlnPheValPheGluGluIleGlnTrpGlnGlnGluLeuSerTrpGluGluAlaAla 60915 : CTCCAGTTTGTGTTTGAGGAGATCCAGTGGCAGCAGGAGCTGAGCTGGGAGGAGGCAGCC : 60974 416 : ArgArgLeuGluValAlaMetTyrProPheLysLys >>>> Target Intron 6 > : 428 |||||||||||||||||||||||||||||||||||| 372 bp ArgArgLeuGluValAlaMetTyrProPheLysLys++ 60975 : CGGCGCCTGGAGGTGGCCATGTACCCCTTCAAGAAGgt...................... : 61015 429 : >>> ValSerTyrLeuProPheThrGluAlaPheAspArgAlaLysAlaGluAsnLysL : 446 |||!!!|||||||||||||||||||||||||||!:!|||||||||:!!||||||| ++ValThrTyrLeuProPheThrGluAlaPheAspGlnAlaLysAlaLysAsnLysL 61016 : ...agGTCACCTACCTGCCGTTCACCGAGGCCTTTGACCAAGCCAAGGCCAAGAACAAGC : 61439 447 : euValHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSerCysUnk{G} >>>> : 463 ||||||||||||||||||||||||||||||||||||||||||||||| {|} euValHisSerIleLeuLeuTrpGlyAlaLeuAspAspGlnSerCys***{G}++ 61440 : TGGTGCACTCAATCCTGCTGTGGGGGGCCCTGGACGACCAGTCCTGCTGA{G}gt..... : 61493 464 : Target Intron 7 >>>> {ly}SerGlyArgThrLeuArgGluThrValLeuGluS : 475 1066 bp {||}|||||||||||||||||||||||||||||||||| ++{ly}SerGlyArgThrLeuArgGluThrValLeuGluS 61494 : ....................ag{GT}TCAGGGCGGACTCTCCGGGAGACGGTCCTGGAAA : 62592 476 : erSerProIleLeuThrLeuLeuAsnGluSerPheIleSerThrTrpSerLeuValLysG : 495 ||||||||||||||.!!||||||||||||||||||||||||||||||||||||||||||| erSerProIleLeuAlaLeuLeuAsnGluSerPheIleSerThrTrpSerLeuValLysG 62593 : GTTCGCCCATCCTCGCCCTCCTCAACGAGAGCTTCATCAGCACCTGGTCCCTGGTGAAGG : 62652 496 : luLeuGluGluLeuGln >>>> Target Intron 8 >>>> AsnAsnGlnGluAs : 505 ||||||||!!:|||||| 91 bp |||||||||||||| luLeuGluAspLeuGln++ ++AsnAsnGlnGluAs 62653 : AGCTGGAGGACCTGCAGgt.........................agAACAACCAGGAGAA : 62773 506 : nSerSerHisGlnLysLeuAlaGlyLeuHisLeuGluLysTyrSerPheProValGluMe : 525 | !!||||||||||||||||||.!!||||||||||||||||||||||||||||||||||| nProSerHisGlnLysLeuAlaSerLeuHisLeuGluLysTyrSerPheProValGluMe 62774 : CCCATCCCACCAGAAGCTGGCCAGCCTGCACCTGGAGAAGTACAGCTTCCCCGTGGAGAT : 62833 526 : tMetIleCysLeuProAsnGlyThrVal >>>> Target Intron 9 >>>> Val : 535 |||||||||||||||||||||||||||| 1417 bp :!! tMetIleCysLeuProAsnGlyThrVal++ ++Ile 62834 : GATGATCTGCCTGCCCAATGGCACCGTGgt.........................agATC : 64280 536 : HisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerValLysProGluGluIleGlu : 555 |||||||||||||||||||||||||||||||||||||||:!!|||||||||!!:|||||| HisHisIleAsnAlaAsnTyrPheLeuAspIleThrSerMetLysProGluAspIleGlu 64281 : CACCACATTAACGCCAACTACTTCTTGGACATCACGTCCATGAAGCCCGAGGACATTGAG : 64340 556 : SerAsnLeuPheSerPheSerSerThrPheGluAspProSerThrAlaThrTyrMetGln : 575 !:!:!!:!!||||||||||||||||||||||||||||||||||||||||||||||||||| AsnHisValPheSerPheSerSerThrPheGluAspProSerThrAlaThrTyrMetGln 64341 : AACCACGTCTTCAGCTTCTCGTCCACCTTTGAAGACCCGTCCACGGCCACCTACATGCAG : 64400 576 : PheLeuLysGluGlyLeuArgArgGlyLeuProLeuLeuGlnPro : 590 ||||||||||||||||||||||||||||||||||||||||||||| PheLeuLysGluGlyLeuArgArgGlyLeuProLeuLeuGlnPro 64401 : TTCCTGAAGGAGGGCCTCCGGCGCggcctgcccctcctccagccc : 64447 vulgar: SPP00000018_1.0 127 590 . NIVO01052487.1:subseq(910706,114447) 54423 64447 + 2204 M 52 156 5 0 2 I 0 2739 3 0 2 M 36 108 G 0 3 M 34 102 5 0 2 I 0 174 3 0 2 M 41 123 S 0 2 5 0 2 I 0 571 3 0 2 S 1 1 M 45 135 S 0 2 5 0 2 I 0 1568 3 0 2 S 1 1 M 27 81 5 0 2 I 0 614 3 0 2 M 63 189 5 0 2 I 0 368 3 0 2 M 35 105 S 0 1 5 0 2 I 0 1062 3 0 2 S 1 2 M 37 111 5 0 2 I 0 87 3 0 2 M 34 102 5 0 2 I 0 1413 3 0 2 M 56 168 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-12-03 ##type DNA # # # seqname source feature start end score strand frame attributes # NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local gene 54424 64447 2204 + . gene_id 1 ; sequence SPP00000018_1.0 ; gene_orientation + NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 54424 54579 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 54424 54579 . + . insertions 0 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice5 54580 54581 . + . intron_id 1 ; splice_site "GT" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local intron 54580 57322 . + . intron_id 1 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice3 57321 57322 . + . intron_id 0 ; splice_site "ag" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 57323 57535 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 57323 57535 . + . insertions 3 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice5 57536 57537 . + . intron_id 2 ; splice_site "GT" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local intron 57536 57713 . + . intron_id 2 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice3 57712 57713 . + . intron_id 1 ; splice_site "ag" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 57714 57838 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 57714 57838 . + . insertions 0 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice5 57839 57840 . + . intron_id 3 ; splice_site "GT" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local intron 57839 58413 . + . intron_id 3 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice3 58412 58413 . + . intron_id 2 ; splice_site "AG" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 58414 58551 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 58414 58551 . + . insertions 0 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice5 58552 58553 . + . intron_id 4 ; splice_site "GT" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local intron 58552 60123 . + . intron_id 4 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice3 60122 60123 . + . intron_id 3 ; splice_site "AG" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 60124 60205 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 60124 60205 . + . insertions 0 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice5 60206 60207 . + . intron_id 5 ; splice_site "GT" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local intron 60206 60823 . + . intron_id 5 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice3 60822 60823 . + . intron_id 4 ; splice_site "AG" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 60824 61012 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 60824 61012 . + . insertions 0 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice5 61013 61014 . + . intron_id 6 ; splice_site "GT" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local intron 61013 61384 . + . intron_id 6 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice3 61383 61384 . + . intron_id 5 ; splice_site "AG" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 61385 61490 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 61385 61490 . + . insertions 0 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice5 61491 61492 . + . intron_id 7 ; splice_site "GT" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local intron 61491 62556 . + . intron_id 7 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice3 62555 62556 . + . intron_id 6 ; splice_site "AG" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 62557 62669 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 62557 62669 . + . insertions 0 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice5 62670 62671 . + . intron_id 8 ; splice_site "GT" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local intron 62670 62760 . + . intron_id 8 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice3 62759 62760 . + . intron_id 7 ; splice_site "AG" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 62761 62862 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 62761 62862 . + . insertions 0 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice5 62863 62864 . + . intron_id 9 ; splice_site "GT" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local intron 62863 64279 . + . intron_id 9 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice3 64278 64279 . + . intron_id 8 ; splice_site "AG" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 64280 64447 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 64280 64447 . + . insertions 0 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local similarity 54424 64447 2204 + . alignment_id 1 ; Query SPP00000018_1.0 ; Align 54424 128 156 ; Align 57323 180 108 ; Align 57434 216 102 ; Align 57714 250 123 ; Align 58415 292 135 ; Align 60125 338 81 ; Align 60824 365 189 ; Align 61385 428 105 ; Align 62559 464 111 ; Align 62761 501 102 ; Align 64280 535 168 # --- END OF GFF DUMP --- # C4 Alignment: ------------ Query: SPP00000018_1.0 # Protein # Selenoprotein N (SelN) # Homo sapiens # Complete Target: NIVO01052487.1:subseq(910706,114447) Ammotragus lervia isolate NAZ scaffold1691_len2048260_cov73, whole genome shotgun sequence Model: protein2genome:local Raw score: 384 Query range: 0 -> 102 Target range: 49140 -> 50110 1 : MetGlyArgAlaArgProGlyGlnArgGlyProProSerProGlyProAlaAlaGlnPro : 20 |||||||||.!!|||||||||:!!||||||||||||.!!||||||||||||||| ||| MetGlyArgThrArgProGlyGluArgGlyProProGlyProGlyProAlaAla---Pro 49141 : ATGGGCCGGACCCGGCCGGGCGAGCGCGGGCCTCCGGGCCCCGGCCCCGCCGCG---CCG : 49195 21 : ProAlaProProArgArgArgAlaArgSerLeuAlaLeuLeuGlyAlaLeuLeu<->Ala : 39 ||||||||||||! !||||||||||||:!!|||||||||||||||||||||||| ||| ProAlaProProProArgArgAlaArgAlaLeuAlaLeuLeuGlyAlaLeuLeuAlaAla 49196 : CCCGCGCCCCCGCCGCGCCGCGCCCGCGCCCTGGCGCTGCTCGGGGCGCTGctcgccgcc : 49255 40 : AlaAlaAlaAlaAlaAlaValArgValCysAlaArgHisAlaGluAlaGlnAlaAlaAla : 59 ||||||||||||||||||...|||...! !||||||:!!::!|||||||||||||||||| AlaAlaAlaAlaAlaAlaAlaArgAlaPheAlaArgTyrSerGluAlaGlnAlaAlaAla 49256 : gccgcggccgccgccgccgcccgggccTTCGCCCGCTACAGCGAGGCCCAGGCGGCCGCG : 49315 60 : ArgGln >>>> Target Intron 1 >>>> GluLeuAlaLeuLysThrLeuGlyT : 70 |||||| 664 bp !!:! !||||||||||||||||||| ArgGln++ ++AspSerAlaLeuLysThrLeuGlyT 49316 : AGGCAGgt.........................agGATTCAGCACTGAAAACCCTGGGGA : 50012 71 : hrAspGlyLeuPheLeuPheSerSerLeuAspThrAspGlyAspMetTyrIleSerProG : 90 ||!!:||||||||||||||||||||||||||||||||| !!||||||||||||||||||| hrGluGlyLeuPheLeuPheSerSerLeuAspThrAspArgAspMetTyrIleSerProG 50013 : CAGAAggcctcttcctcttctcctccctggaCACTGACCGGGACATGTACATCAGCCCCG : 50072 91 : luGluPheLysProIleAlaGluLysLeuThrGlySer : 102 |||||||||||||||||||||||||||||||||||!!! luGluPheLysProIleAlaGluLysLeuThrGlyThr 50073 : AGGAGTTCAAGCCCATCGCTGAGAAGCTGACAGGTACC : 50110 vulgar: SPP00000018_1.0 0 102 . NIVO01052487.1:subseq(910706,114447) 49140 50110 + 384 M 18 54 G 1 0 M 19 57 G 0 3 M 23 69 5 0 2 I 0 660 3 0 2 M 41 123 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-12-03 ##type DNA # # # seqname source feature start end score strand frame attributes # NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local gene 49141 50110 384 + . gene_id 2 ; sequence SPP00000018_1.0 ; gene_orientation + NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 49141 49323 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 49141 49323 . + . insertions 3 ; deletions 1 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice5 49324 49325 . + . intron_id 1 ; splice_site "GT" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local intron 49324 49987 . + . intron_id 1 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local splice3 49986 49987 . + . intron_id 0 ; splice_site "AG" NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local cds 49988 50110 . + . NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local exon 49988 50110 . + . insertions 0 ; deletions 0 NIVO01052487.1:subseq(910706,114447) exonerate:protein2genome:local similarity 49141 50110 384 + . alignment_id 2 ; Query SPP00000018_1.0 ; Align 49141 1 54 ; Align 49195 20 57 ; Align 49255 39 69 ; Align 49988 62 123 # --- END OF GFF DUMP --- # -- completed exonerate analysis