------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 501735 - 501660
 Found by:  Infernal (score=18.67) Covels (score=16.35)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 0
 Free Energy = -8.26
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))...........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu--u-uuucaugaccggc
         ....(({{((--((..([[{((((((((((......--.........))))))))))}]]).......-))))}}))....
 target  UUCAGUCAAG--UAAGUGAACAUUGUUUUUCAAACC--UCCAUACAAGGGAACAAUGAGAAGCAGAUA-UACUCCACGCUU
                         ****           ^^^                       ****                    

------- SECIS element -- id:2 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49960 - 49888
 Found by:  Infernal (score=14.3) Covels (score=22.68)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 0, 0
 Free Energy = -23.79
 Type = 1

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..(((((((---....{[[{(({((((((((................))))))))}))}]]}..--..-.)))))))..
 target  CCUGGGGAC---AGAAUGAAGCGCUCAGCGGCCCGGGAGCACCUCCCUCGUUGAGGGCCGACGC--CC-CGUCCCCGAG
                         ****           ^^                         ****                 

------- SECIS element -- id:3 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 549601 - 549688
 Found by:  Infernal (score=12.54) Covels (score=3.39)
 Stem2 length = 12   Apical loop length = 19   Insertion in stem2 = 2, 0
 Free Energy = -10.14
 Type = 1

         ..(((((((..........((((((((((.((.(((.....................))))))))))))))).........)))))))..
 model   uucggucaugcg---UuaAUGAcGgccug-gc-ccuAAAcC------cuuuuuggggcgggccaggcCuGAUGuuu-uuucaugaccggc
         .({((((((..........([[{((((((.((.((((...................))))))))))))}]]).....-.-.))))))}).
 target  UGAGCAUCUGGGGGAAGAGUGAUGAAGGGGACAUCUGAAGCUCUGUCCUGCUAAGCUGGGGUCCUUUCUGAAUCAUU-G-AAGAUGUCUU
                            ****              ^^                             ****                  

------- SECIS element -- id:4 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 357720 - 357797
 Found by:  Infernal (score=12.2) Covels (score=8.93)
 Stem2 length = 10   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -6.05
 Type = 1

         ..(((((((.......(((((((((((((((......................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((({{(((---(...([[{(({((((((((......................))))))))}))}]])----...))))}}))).
 target  UUUUUCUCU---UAUGUGAUGCCAUUUUUUUAAAUCUGUUUGCUUAAAAAAAAAAAAAGGUAGUUGAA----UCGGAGGCCAAGC
                         ****           ^^^                              ****                 

------- SECIS element -- id:5 -- grade:B ----
 Chromosome = your_sequence Strand = + Positions = 482630 - 482692
 Found by:  Infernal (score=12.01) Covels (score=2.51)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -6.8
 Type = 1

         ..(((((((.......(((((((((((((((................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC-cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ..((({(((.......([[{([(((((((.------....-----....)))))))])}]])----..-.)))})))..
 target  UGUUGUCUUCCUCAUAUGAUGACUGCUGAA------UCGU-----GCAGUCAGUAGGCUGAG----UU-UGAGUCGAGG
                         ****                                      ****                 

------- SECIS element -- id:6 -- grade:C ----
 Chromosome = your_sequence Strand = + Positions = 99931 - 100012
 Found by:  Infernal (score=10.27)
 Stem2 length = 7   Apical loop length = 24   Insertion in stem2 = 0, 0
 Free Energy = -6.96
 Type = 1

         ..(((((((.........(((((((((((((((......................)))))))))))))))........)))))))..
 model   uucggucaugcg--UuaAUGAcGgccuggcccuAAAcC-------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .((({((((.........{[[({(((((({{(........................)}}))))))})]]}----..-.))))}))).
 target  AAAGAACAGAUUCAAAAAUGAAACAGAUGCUUCCAACCCAAGUGGUUUGUCCCCAAGCACAUCUGCUGAU----CU-GCUGUCCUUG
                           ****            ^^                              ****