genewise output
Score 23.20 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000017_1.0  121 DAQVPPEYVWAPAKP                                   
                     DA VP E +W PA P                                   
                     DAGVPAEAIWRPADP                                   
NIVO01044519.1661533 ggggcgggatacggc                                   
                     acgtccactggccac                                   
                     tcaatgagtggagta                                   


//
>NIVO01044519.1:subseq(733635,745166).pep
DAGVPAEAIWRPADP
//
>NIVO01044519.1:subseq(733635,745166).[661533:661577].sp
GATGCCGGAGTACCTGCGGAAGCGATTTGGAGGCCAGCGGATCCA
//
NIVO01044519.1:subseq(733635,745166)	GeneWise	match	661533	661577	23.20	+	.	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
NIVO01044519.1:subseq(733635,745166)	GeneWise	cds	661533	661577	0.00	+	0	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
//

genewise output
Score 169.93 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000017_1.0    1 MSLLLPPLALLLLLAALVAPATAATAYRPDWNRLSGLTRARVE       
                     M L LPP  LLLLLAA+ A   A T +RPDWNRL GL RARVE       
                     MHLPLPPPPLLLLLAAVAA---ATTTFRPDWNRLQGLARARVE       
NIVO01044519.1-52537 acccccccccccccggggg   gaaatccgtacccgcgcgcgg       
                     tatctcccctttttcctcc   cccctgcagagtagtcgcgta       
                     gccggtggcggcccgacgc   cccccgccgctaacgcacgag       


SPP00000017_1.0   44                        TCGGXQLNRLKE               
                                            TCGGXQLNRLKE               
                                            TCGGXQLNRLKE               
NIVO01044519.1-52417 GTGAGTG  Intron 1   CAGatggtccaccag               
                     <0-----[52417:50939]-0>cggggatagtaa               
                                            ataaagttccgg               


SPP00000017_1.0   56                        VKAFVTQDIPF                
                                            VKAFVTQDIP+                
                                            VKAFVTQDIPL                
NIVO01044519.1-50902 GTGAGTT  Intron 2   CAGgagtgacgacc                
                     <0-----[50902:50706]-0>tacttcaatct                
                                            ggccccgccac                


SPP00000017_1.0   67                           HNLVMKHLPGADPELVLLGRRYE 
                                               HNLVMKHLPGADPELVLLG R+E 
                                Y:Y[tac]       HNLVMKHLPGADPELVLLGHRFE 
NIVO01044519.1-50672 TAGTATCCT  Intron 3   CAGCcacgaacccgggcgcgtcgcctg 
                       <2-----[50670:50312]-2> aatttaatcgcacattttgagta 
                                               ccgggactggccagcgggctctg 


SPP00000017_1.0   91 ELE                       RIPLSEMTREEINALVQELGFYR 
                     ELE                       RIPLS+MTREEINALVQELGFYR 
                     ELE                       RIPLSDMTREEINALVQELGFYR 
NIVO01044519.1-50241 gcgGTGAGGC  Intron 4   CAGcaccagaacggaagcgcgcgttc 
                     ata<0-----[50232:50156]-0>gtctgatcgaatacttaatgtag 
                     agg                       atacccgccggccgggggccccc 


SPP00000017_1.0  117 KAAPDAQVPPEYVWAPAKPPEETSDHADL                     
                     KA+PD  VPPEY+ APA+P   T DHADL                     
                     KASPDDPVPPEYLRAPARPAGGTPDHADL                     
NIVO01044519.1-50086 agtcggcgccgtccgcgacgggacgcggc                     
                     acccaactccaatgcccgccggccaacat                     
                     ggtccctgcggctgtctgccacttccacg                     


//
Making a Y in phase 2 intron
>NIVO01044519.1:subseq(733635,745166).pep
MHLPLPPPPLLLLLAAVAAATTTFRPDWNRLQGLARARVETCGGXQLNRLKEVKAFVTQD
IPLYHNLVMKHLPGADPELVLLGHRFEELERIPLSDMTREEINALVQELGFYRKASPDDP
VPPEYLRAPARPAGGTPDHADL
//
>NIVO01044519.1:subseq(733635,745166).[52537:49998].sp
ATGCACCTCCCGCTGCCTCCGCCGCCCCTGCTGCTCCTCCTCGCGGCAGTCGCGGCCGCC
ACCACCACCTTCCGGCCCGACTGGAACCGTCTACAAGGCCTGGCCCGAGCCCGGGTAGAG
ACATGTGGAGGATGACAGCTTAATCGCCTCAAGGAGGTGAAGGCCTTCGTCACCCAGGAC
ATCCCACTCTACCACAACCTGGTGATGAAACACCTTCCGGGGGCCGACCCAGAGCTCGTG
TTGCTGGGCCATCGCTTTGAGGAACTGGAGCGAATTCCACTCAGCGACATGACCCGCGAG
GAGATCAACGCGCTGGTGCAGGAGCTCGGCTTCTACCGCAAGGCGTCTCCCGACGACCCT
GTGCCCCCGGAGTACCTTCGGGCTCCCGCTAGGCCCGCCGGAGGCACTCCTGACCACGCA
GACCTG
//
NIVO01044519.1:subseq(733635,745166)	GeneWise	match	52537	50000	171.93	-	.	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
NIVO01044519.1:subseq(733635,745166)	GeneWise	cds	52537	52418	0.00	-	0	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
NIVO01044519.1:subseq(733635,745166)	GeneWise	intron	52417	50939	0.00	-	.	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
NIVO01044519.1:subseq(733635,745166)	GeneWise	cds	50938	50903	0.00	-	0	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
NIVO01044519.1:subseq(733635,745166)	GeneWise	intron	50902	50706	0.00	-	.	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
NIVO01044519.1:subseq(733635,745166)	GeneWise	cds	50705	50671	0.00	-	0	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
NIVO01044519.1:subseq(733635,745166)	GeneWise	intron	50670	50312	0.00	-	.	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
NIVO01044519.1:subseq(733635,745166)	GeneWise	cds	50311	50233	0.00	-	1	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
NIVO01044519.1:subseq(733635,745166)	GeneWise	intron	50232	50156	0.00	-	.	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
NIVO01044519.1:subseq(733635,745166)	GeneWise	cds	50155	50000	0.00	-	0	NIVO01044519.1:subseq(733635,745166)-genewise-prediction-1
//