------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 48961 - 48872 Found by: Infernal (score=26.19) Covels (score=40.54) Stem2 length = 11 Apical loop length = 17 Insertion in stem2 = 0, 0 Free Energy = -22.43 Type = 1 ..(((((((.....................(((((((((((((((.................)))))))))))))))........))))))).. model uucggucaugcg--------------UuaAUGAcGgccuggcccuAAAcC--cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc .(((((((((....................{[[((((((((((((.................))))))))))))]]}----...))))))))). target CUAGGACUGCUCUGUGUCCUCACAGACGAAUGAAGUCAUGCUGGGAAUUCCCUCUGCAGGGAUCUGGCAUGACUGAC----AACGCAGUUCUAU **** ^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = - Positions = 37032 - 36956 Found by: Infernal (score=13.25) Covels (score=2.82) Stem2 length = 11 Apical loop length = 19 Insertion in stem2 = 0, 0 Free Energy = -19.81 Type = 1 ..(((((((.......(((((((((((((((.....................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcC------cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc (({((((((---(((.([[(({((((((((((...................))))))))))}))]])----.)))))))))})) target AAUAUGAUC---CUAAUGAAGAUGGGUUUUUCAGGUAUGUCUGUUAUUCCAGGGAAACCUGCCUGAA----AUGGGAUUGUUUU **** ****