genewise output
Score 20.93 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000016_1.0   64 RGPPGNPPRRMGRINHLRG                               
                     RGPP  PP  + R+ H RG                               
                     RGPP-PPPHLLQRLRHQRG                               
NIVO01057317.1:45480 cgcc cccccccccccccg                               
                     ggcc cccattagtgaagg                               
                     acgc ggtccggacgcgcg                               


//
>NIVO01057317.1:subseq(1767370,101651).pep
RGPPPPPHLLQRLRHQRG
//
>NIVO01057317.1:subseq(1767370,101651).[45480:45533].sp
CGAGGCCCGCCCCCGCCGCCTCACCTCCTGCAGCGACTCCGGCACCAGCGCGGG
//
NIVO01057317.1:subseq(1767370,101651)	GeneWise	match	45480	45533	20.93	+	.	NIVO01057317.1:subseq(1767370,101651)-genewise-prediction-1
NIVO01057317.1:subseq(1767370,101651)	GeneWise	cds	45480	45533	0.00	+	0	NIVO01057317.1:subseq(1767370,101651)-genewise-prediction-1
//

genewise output
Score 168.07 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000016_1.0    3 YISNGQVLDSRSQSPWRLSLITDFFWGIAEFVVL                
                     ++S GQVLDSRSQSPWRLS ITDFFWGIAEFVVL                
                     FLSAGQVLDSRSQSPWRLSFITDFFWGIAEFVVL                
NIVO01057317.1-51651 tttggcgtgaaactctatttaagtttgaggtggt                
                     ttccgattagggaccggtcttcattggtcatttt                
                     cataaaggccgtgcagaattaatccgaacgcgtg                


SPP00000016_1.0   37                           FKTLLQQDVKKRRSYGNSSDSRY 
                                               F+TLLQQDVKKRR YG+SSDSRY 
                                F:F[ttt]       FRTLLQQDVKKRRGYGSSSDSRY 
NIVO01057317.1-51549 TTGTAAGTA  Intron 1   CAGTtaaccccggaaaagtgattgtat 
                       <2-----[51547:50076]-2> tgcttaaataagggaggccacga 
                                               catgtaatgagaaccacattcat 


SPP00000016_1.0   61 DDGR                          PPGNPPRR-MGRINHLRGP 
                     DDGR                          PPGNPPRR MGRINHL+GP 
                     DDGR           G:G[ggg]       PPGNPPRRRMGRINHLQGP 
NIVO01057317.1-50005 gggaGGGTATAAC  Intron 2   TAGGccgaccaaaagcaacccgc 
                     aagg  <2-----[49991:49424]-2> ccgaccgggtggtaatagc 
                     tcaa                          aaacccaaagtatttggct 


SPP00000016_1.0   84 SPPPMAGG                                          
                     SPPPMAGG                                          
                     SPPPMAGG                                          
NIVO01057317.1-49365 acccaggg                                          
                     gccctcgg                                          
                     tttagcta                                          


//
Making a F in phase 2 intron
Making a G in phase 2 intron
>NIVO01057317.1:subseq(1767370,101651).pep
FLSAGQVLDSRSQSPWRLSFITDFFWGIAEFVVLFFRTLLQQDVKKRRGYGSSSDSRYDD
GRGPPGNPPRRRMGRINHLQGPSPPPMAGG
//
>NIVO01057317.1:subseq(1767370,101651).[51651:49340].sp
TTCTTATCTGCAGGACAAGTGTTGGACAGCAGGAGTCAGTCCCCATGGAGATTATCTTTT
ATAACAGATTTCTTCTGGGGAATAGCCGAGTTCGTGGTTTTGTTTTTCAGAACTCTGCTT
CAACAAGATGTGAAAAAGAGAAGAGGCTACGGAAGCTCATCTGATTCCAGATATGATGAC
GGAAGAGGGCCACCAGGAAACCCCCCCAGAAGAAGAATGGGTCGAATTAATCATCTGCAG
GGCCCTAGTCCTCCTCCAATGGCCGGTGGA
//
NIVO01057317.1:subseq(1767370,101651)	GeneWise	match	51651	49342	168.07	-	.	NIVO01057317.1:subseq(1767370,101651)-genewise-prediction-1
NIVO01057317.1:subseq(1767370,101651)	GeneWise	cds	51651	51548	0.00	-	0	NIVO01057317.1:subseq(1767370,101651)-genewise-prediction-1
NIVO01057317.1:subseq(1767370,101651)	GeneWise	intron	51547	50076	0.00	-	.	NIVO01057317.1:subseq(1767370,101651)-genewise-prediction-1
NIVO01057317.1:subseq(1767370,101651)	GeneWise	cds	50075	49992	0.00	-	1	NIVO01057317.1:subseq(1767370,101651)-genewise-prediction-1
NIVO01057317.1:subseq(1767370,101651)	GeneWise	intron	49991	49424	0.00	-	.	NIVO01057317.1:subseq(1767370,101651)-genewise-prediction-1
NIVO01057317.1:subseq(1767370,101651)	GeneWise	cds	49423	49342	0.00	-	1	NIVO01057317.1:subseq(1767370,101651)-genewise-prediction-1
//