Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../SelK-human.fa -t SelK-NIVO01057317.1.subseq] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000016_1.0 # Protein # Selenoprotein K (SelK) # Homo sapiens # Complete Target: NIVO01057317.1:subseq(1767370,101651) Ammotragus lervia isolate NAZ scaffold2394_len1964749_cov73, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 436 Query range: 0 -> 94 Target range: 54751 -> 21443 1 : MetValTyrIleSerAsn{G} >>>> Target Intron 1 >>>> {ly}GlnVal : 9 ||||||||||||||||||{|} 3094 bp {||}|||||| MetValTyrIleSerAsn{G}++ ++{ly}GlnVal 54751 : ATGGTTTACATCTCGAAT{G}gt.........................ag{GA}CAAGTG : 51633 10 : LeuAspSerArgSerGlnSerProTrpArgLeuSerLeuIleThrAspPhePheTrpGly : 29 ||||||||||||||||||||||||||||||||||||!!!||||||||||||||||||||| LeuAspSerArgSerGlnSerProTrpArgLeuSerPheIleThrAspPhePheTrpGly 51632 : TTGGACAGCAGGAGTCAGTCCCCATGGAGATTATCTTTTATAACAGATTTCTTCTGGGGA : 51573 30 : IleAlaGluPheValValLeu{Ph} >>>> Target Intron 2 >>>> {e}Phe : 38 |||||||||||||||||||||{||} 1472 bp {|}||| IleAlaGluPheValValLeu{Ph}++ ++{e}Phe 51572 : ATAGCCGAGTTCGTGGTTTTG{TT}gt.........................ag{T}TTC : 50074 39 : LysThrLeuLeuGlnGlnAspValLysLysArgArgSerTyrGlyAsnSerSerAspSer : 58 !:!|||||||||||||||||||||||||||||||||.!!||||||!:!|||||||||||| ArgThrLeuLeuGlnGlnAspValLysLysArgArgGlyTyrGlySerSerSerAspSer 50073 : AGAACTCTGCTTCAACAAGATGTGAAAAAGAGAAGAGGCTACGGAAGCTCATCTGATTCC : 50014 59 : ArgTyrAspAspGlyArg{Gl} >>>> Target Intron 3 >>>> {y}ProPro : 67 ||||||||||||||||||{||} 568 bp {|}|||||| ArgTyrAspAspGlyArg{Gl}++ ++{y}ProPro 50013 : AGATATGATGACGGAAGA{GG}gt.........................ag{g}ccacca : 49419 68 : GlyAsnProPro<->ArgArgMetGlyArgIleAsnHisLeuArgGlyProSerProPro : 86 |||||||||||| |||||||||||||||||||||||||||!:!||||||||||||||| GlyAsnProProArgArgArgMetGlyArgIleAsnHisLeuGlnGlyProSerProPro 49418 : ggaaaccccCCCAGAAGAAGAATGGGTCGAATTAATCATCTGCAGGGCCCTAGTCCTCCT : 49359 87 : ProMetAlaGlyGlyUnkGly{Ar} >>>> Target Intron 4 >>>> {g} : 94 ||||||||||||||| |||{||} 27889 bp {|} ProMetAlaGlyGly***Gly{Ar}++ ++{g} 49358 : CCAATGGCCGGTGGATGAGGA{AG}gt.........................ag{g} : 21444 vulgar: SPP00000016_1.0 0 94 . NIVO01057317.1:subseq(1767370,101651) 54751 21443 - 436 M 6 18 S 0 1 5 0 2 I 0 3090 3 0 2 S 1 2 M 29 87 S 0 2 5 0 2 I 0 1468 3 0 2 S 1 1 M 27 81 S 0 2 5 0 2 I 0 564 3 0 2 S 1 1 M 6 18 G 0 3 M 22 66 S 0 2 5 0 2 I 0 27885 3 0 2 S 1 1 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-17 ##type DNA # # # seqname source feature start end score strand frame attributes # NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local gene 21444 54751 436 - . gene_id 1 ; sequence SPP00000016_1.0 ; gene_orientation + NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local cds 54733 54751 . - . NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local exon 54733 54751 . - . insertions 0 ; deletions 0 NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local splice5 54731 54732 . - . intron_id 1 ; splice_site "GT" NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local intron 51639 54732 . - . intron_id 1 NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local splice3 51639 51640 . - . intron_id 0 ; splice_site "AG" NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local cds 51548 51638 . - . NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local exon 51548 51638 . - . insertions 0 ; deletions 0 NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local splice5 51546 51547 . - . intron_id 2 ; splice_site "GT" NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local intron 50076 51547 . - . intron_id 2 NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local splice3 50076 50077 . - . intron_id 1 ; splice_site "AG" NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local cds 49992 50075 . - . NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local exon 49992 50075 . - . insertions 0 ; deletions 0 NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local splice5 49990 49991 . - . intron_id 3 ; splice_site "GT" NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local intron 49424 49991 . - . intron_id 3 NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local splice3 49424 49425 . - . intron_id 2 ; splice_site "ag" NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local cds 49334 49423 . - . NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local exon 49334 49423 . - . insertions 3 ; deletions 0 NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local splice5 49332 49333 . - . intron_id 4 ; splice_site "GT" NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local intron 21445 49333 . - . intron_id 4 NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local splice3 21445 21446 . - . intron_id 3 ; splice_site "ag" NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local utr3b 21444 21444 . - . NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local exon 21444 21444 . - . insertions 0 ; deletions 0 NIVO01057317.1:subseq(1767370,101651) exonerate:protein2genome:local similarity 21444 54751 436 - . alignment_id 1 ; Query SPP00000016_1.0 ; Align 54752 1 18 ; Align 51637 8 87 ; Align 50075 38 81 ; Align 49423 66 18 ; Align 49402 72 66 # --- END OF GFF DUMP --- # -- completed exonerate analysis