genewise output Score 778.21 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000015_1.0 1 MAGYEYVSPEQLAGFDKYK YSAVDTN MA YEYVSPEQLAGFDKYK YSAVDTN MASYEYVSPEQLAGFDKYK YSAVDTN NIVO01032443.1: 1 agatgtgacgccggtgataGTAGCGC Intron 1 CAGtagggaa tcgaaatgcaatcgtaaaa<0-----[58 :17481]-0>agctaca gatcacgcggggtcttgcg cttgtct SPP00000015_1.0 27 PLSLYVMHPFWNTIVK VFPTWLAPNL PLSLYVMHPFWNT+VK VFPTWLAPNL PLSLYVMHPFWNTVVK VFPTWLAPNL NIVO01032443.1:17503 cctctgaccttaaggaGTAAGAT Intron 2 TAGgtcatcgcac ctctattactgactta<0-----[17551:18001]-0>ttccgtccat actgtcgcgtgctaag atttggtatg SPP00000015_1.0 53 ITFSGFLLVVFNFLLMAYFDPDFYAS ITFSGFLLVVFNFLL+AYFDPDFYAS ITFSGFLLVVFNFLLLAYFDPDFYAS A:A[gca] NIVO01032443.1:18032 aattgtccggtatcctgttgcgttgtGGTATGAT Intron 3 tctcgttttttattttcatacatacc <1-----[18111:20354] acctctggcgcttatgactttcttta SPP00000015_1.0 79 PGHKHVPDWVWIVVGILNFVAYTL PGHKHVPDWVWIVVGILNF+AYTL PGHKHVPDWVWIVVGILNFMAYTL NIVO01032443.1:20352 CAGCAcgcacgcgtgtagggacatagtac -1> cgaaatcagtgtttgttattcact atcgtaccgcgtagcccccgccta SPP00000015_1.0 104 GVDGKQARRTNSSTPLGELFDHG GVDGKQARRTNSSTPLGELFDHG D:D[gat] GVDGKQARRTNSSTPLGELFDHG NIVO01032443.1:20429 GGTAAGAA Intron 4 CAGATggggacgcaaataaccggctgcg <1-----[20430:24475]-1> gtagaacggcacgcctgattaag tgcagaccactcccggggttctc SPP00000015_1.0 128 LDSWSCVYFVVTVYSIFGRGSTGVSVFVLYLLLWVVLFSFILSHWEKYN LDSWSCVYFVVTVYSIFGRGS+GVSVFVLYLLLWVVLFSFILSHWEKYN LDSWSCVYFVVTVYSIFGRGSSGVSVFVLYLLLWVVLFSFILSHWEKYN NIVO01032443.1:24547 cgatttgttggagttatgcgttggagtgctccctggttttactctgata taggcgtatttctacttgggccgtgttttatttgttttctttcagaaaa gttgattcttccgtcttaaaattcttttttcgagatgttccgttgagtc SPP00000015_1.0 177 TGILFLPWGYDISQV TISFVYIVTAV TGILFLPWGYDISQV TISFVYIVTAV TGILFLPWGYDISQV TISFVYIVTAV NIVO01032443.1:24694 agactcctgtgaacgGTAAGTA Intron 5 CAGaattgtagagg cgttttcggaatgat<0-----[24739:25640]-0>ctcttattcct aattcgagatctcgg ttttccagtat SPP00000015_1.0 203 VGVEAWYEPFLFNFLYRDLFTAMII VGVEAWYEPFLFNFLYRDLFTAMII VGVEAWYEPFLFNFLYRDLFTAMII G:G[ggt] NIVO01032443.1:25674 gggggttgctctatttagctagaaaGGTAAGAA Intron 6 tgtacgaactttattagattccttt <1-----[25750:31952] gatgcgtatcgttcatacactagct SPP00000015_1.0 228 CALCVTLPMSLLNFF SYK CALCVTLPMSLLNFF SYK CALCVTLPMSLLNFF R:R[aga] SYK NIVO01032443.1:31950 CAGGTtgctgaccaattattAGGTAAGTA Intron 7 CAGAata -1> gctgtctctgttatt <2-----[32002:34000]-2> gaa tagtgttagtgattc cta SPP00000015_1.0 248 NNTLKLNSVYEAMVPLFSPCLLFILSTAWILWSPSDILELHPRVFYFMV NNTLK NSVYEA+VP FSPCLLFILSTAWIL SPSDILELHPRVFY+MV NNTLKHNSVYEAVVPFFSPCLLFILSTAWILLSPSDILELHPRVFYLMV NIVO01032443.1:34011 aaatacatgtggggctttcttctattagtacctctgatgtccagtttag aactaaactaacttcttccgtttttcccgtttcccattatacgttattt tcggactactatgtccttatgactgtaagccaatattagactagccagt SPP00000015_1.0 297 GTAFANST CQLIVCQMSSTRCPTLNW GTAFANST CQLIVCQMSSTRCPTLNW GTAFANST CQLIVCQMSSTRCPTLNW NIVO01032443.1:34158 gagtgaaaGTAAGAT Intron 8 CAGtccagtcaaaactcacat gcctcagc<0-----[34182:35385]-0>gatttgatggcggcctag aactccca tggtttagctcgcatgtg SPP00000015_1.0 323 LLVPLFLVVLVVNLGVASYVESILLYTLTTAFTLAHIHYGVRV LL+PLF +V+VVN+GV YVESILL+ LT AFTLAH+HYGVRV LLLPLFAIVMVVNVGVTPYVESILLFALTAAFTLAHVHYGVRV NIVO01032443.1:35440 tcccctgagaggagggactggaacctgcaggtatgcgctggcg tttcttctttttatgtccatagttttctccctctcataagtgt ggttttgtcgggtaaactcggctcgtgggttctgcccctgaag SPP00000015_1.0 366 VKQLSSHFQIYPFSLRKPNSDXLGME VKQLS+HF IYPFSLRKPNSDXLG+E VKQLSNHFHIYPFSLRKPNSDXLGVE NIVO01032443.1:35569 GTGAGTA Intron 9 TAGgaccaactcatctttaacatgtcggg <0-----[35569:37599]-0>taatgaatatactctgacacagtgta agggccttctcccagaaacgtaaaga SPP00000015_1.0 392 EKNIGL EKNIGL EKNIGL NIVO01032443.1:37678 gaaagc aaatgt agttcg // Making a A in phase 1 intron Making a D in phase 1 intron Making a G in phase 1 intron Making a R in phase 2 intron >NIVO01032443.1:subseq(1395967,37695).pep MASYEYVSPEQLAGFDKYKYSAVDTNPLSLYVMHPFWNTVVKVFPTWLAPNLITFSGFLL VVFNFLLLAYFDPDFYASAPGHKHVPDWVWIVVGILNFMAYTLDGVDGKQARRTNSSTPL GELFDHGLDSWSCVYFVVTVYSIFGRGSSGVSVFVLYLLLWVVLFSFILSHWEKYNTGIL FLPWGYDISQVTISFVYIVTAVVGVEAWYEPFLFNFLYRDLFTAMIIGCALCVTLPMSLL NFFRSYKNNTLKHNSVYEAVVPFFSPCLLFILSTAWILLSPSDILELHPRVFYLMVGTAF ANSTCQLIVCQMSSTRCPTLNWLLLPLFAIVMVVNVGVTPYVESILLFALTAAFTLAHVH YGVRVVKQLSNHFHIYPFSLRKPNSDXLGVEEKNIGL // >NIVO01032443.1:subseq(1395967,37695).[1:37695].sp ATGGCAAGTTACGAATACGTGAGCCCGGAGCAGCTGGCTGGCTTTGATAAGTACAAGTAC AGTGCTGTGGATACCAATCCACTCTCTCTGTATGTCATGCACCCGTTTTGGAACACTGTA GTAAAGGTATTTCCTACTTGGCTGGCTCCAAATCTGATAACCTTCTCTGGCTTTCTGCTG GTCGTGTTCAATTTTCTACTTTTGGCATACTTTGATCCTGACTTTTATGCTTCAGCACCA GGTCACAAGCATGTACCCGACTGGGTCTGGATTGTAGTGGGCATCCTCAACTTCATGGCC TACACTCTAGATGGTGTGGACGGAAAGCAAGCCCGCAGAACCAATTCCAGCACCCCGCTG GGGGAGCTTTTTGACCATGGCCTGGATAGTTGGTCATGTGTTTACTTTGTTGTCACCGTG TATTCCATTTTTGGACGAGGATCATCTGGTGTCAGTGTTTTTGTTCTTTATCTCCTGCTA TGGGTAGTTTTGTTTTCTTTCATCCTGTCTCATTGGGAAAAGTATAACACAGGAATTCTT TTCCTGCCATGGGGATATGACATTAGCCAGGTGACTATTTCTTTTGTCTACATAGTGACT GCAGTTGTGGGAGTTGAGGCCTGGTATGAACCTTTCCTGTTTAATTTCTTATATAGAGAC CTATTCACTGCAATGATCATTGGTTGTGCACTGTGTGTGACTCTTCCAATGAGTTTGTTA AATTTTTTCAGAAGCTATAAAAATAACACGTTGAAACACAATTCAGTCTATGAAGCTGTG GTTCCCTTCTTTTCTCCATGTTTGCTATTCATTTTGTCTACAGCATGGATCCTCCTATCA CCTTCAGATATTTTAGAGTTACACCCTAGAGTGTTCTACTTAATGGTTGGAACAGCCTTT GCCAACAGCACATGTCAGCTGATTGTTTGTCAAATGAGCAGTACCCGGTGCCCAACTCTG AATTGGTTGCTGCTTCCTCTTTTTGCGATTGTCATGGTGGTGAATGTAGGAGTAACCCCT TACGTGGAGAGCATTCTCCTGTTTGCGCTGACGGCTGCTTTCACTTTGGCCCACGTCCAC TATGGGGTACGAGTGGTAAAGCAGCTGAGCAACCATTTTCACATTTACCCCTTCTCATTG AGAAAACCAAACTCGGATTGACTAGGAGTGGAAGAAAAGAATATTGGCCTG // NIVO01032443.1:subseq(1395967,37695) GeneWise match 1 37695 778.21 + . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 1 57 0.00 + 0 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise intron 58 17481 0.00 + . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 17482 17550 0.00 + 0 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise intron 17551 18001 0.00 + . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 18002 18110 0.00 + 0 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise intron 18111 20354 0.00 + . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 20355 20429 0.00 + 2 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise intron 20430 24475 0.00 + . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 24476 24738 0.00 + 2 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise intron 24739 25640 0.00 + . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 25641 25749 0.00 + 0 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise intron 25750 31952 0.00 + . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 31953 32001 0.00 + 2 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise intron 32002 34000 0.00 + . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 34001 34181 0.00 + 1 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise intron 34182 35385 0.00 + . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 35386 35568 0.00 + 0 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise intron 35569 37599 0.00 + . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 37600 37695 0.00 + 0 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 // genewise output Score 19.57 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000015_1.0 157 YLLLWVVLFSFILSHWE Y LW+V F + SH E YFHLWLVGFQYQTSHME NIVO01032443.1-28286 ttcttcggtctcaacag atatgttgtaaacgata cttagggatgtgactga // >NIVO01032443.1:subseq(1395967,37695).pep YFHLWLVGFQYQTSHME // >NIVO01032443.1:subseq(1395967,37695).[28286:28234].sp TACTTTCATTTATGGCTGGTGGGATTTCAGTATCAGACAAGCCATATGGAA // NIVO01032443.1:subseq(1395967,37695) GeneWise match 28286 28236 19.57 - . NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 NIVO01032443.1:subseq(1395967,37695) GeneWise cds 28286 28236 0.00 - 0 NIVO01032443.1:subseq(1395967,37695)-genewise-prediction-1 //