------- SECIS element -- id:1 -- grade:A ---- Chromosome = your_sequence Strand = - Positions = 49236 - 49169 Found by: Infernal (score=26.38) Covels (score=23.93) Stem2 length = 9 Apical loop length = 9 Insertion in stem2 = 0, 0 Free Energy = -15.62 Type = 1 ..(((((((.......(((((((((((((((...............)))))))))))))))..........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc ...(((({(---....([[{((((({((((......--------...))))})))))}]])......-...)}))))... target AUUGGAGCG---UUUAUGACGGGACGUGGCCAAACU--------UCAGUCAGGUCCCCGAAGCUGUG-GUUUCCUCCCCU **** ^^^ **** ------- SECIS element -- id:2 -- grade:B ---- Chromosome = your_sequence Strand = - Positions = 2726 - 2655 Found by: Infernal (score=10.57) Covels (score=4.49) Stem2 length = 10 Apical loop length = 16 Insertion in stem2 = 0, 0 Free Energy = -12.29 Type = 1 ..(((((((.......(((((((((((((((................)))))))))))))))........))))))).. model uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuugggg-cgggccaggcCuGAUGuuuuuucaugaccggc .((({(([(---....([[((((({((((((................))))))})))))]])----....)]))}))). target UUUACUCAU---UUAAUGAUGGGCGGGAUAGCUCUCCACAACGAAAAUUAUCUGGCCCAGAA----UGUCAGGGAUGGU **** ****