_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 6e-53
 Query name: gi|965880151|ref|XP_014965057.1| PREDICTED: selenoprotein H isoform X2 [Ovis aries musimon]
 Query range: 1-164  (total 164)

 Target: /data/www-rg/seblastian_results/477983606/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: -
 Positions:
 -Exon 1  50450        50574
 -Exon 2  50000        50366

 Redox box: YES

Query   MASRGRKRKAEAALAAAAEKREKPAGSREGEVAGPSVVIEHC <---Intron---> TSURVYGRNAAALSQALRLQAPELAVKVNPSRPRRGSFEVTL
        |||||||||||||||||||||||||| /|||||||||||||| <    83bp    > ||||||||||||||||||||||||||||||/|||||||||||
Target  MASRGRKRKAEAALAAAAEKREKPAGGQEGEVAGPSVVIEHC                TSURVYGRNAAALSQALRLQAPELAVKVNPARPRRGSFEVTL
        agtcgaacaggggcgggggacgacgggcggggggcaggagct                aatcgtgcagggcacgccccgcgcggagacgaccagatggac
        tccgggagacacctccccaagaaccggaagatcgcgtttaag                cgggtaggaccctgactgtaccatctataccgcggggtatct
        ggccgggggcggggctgcggggggcccgggaggggccccgc                cgcaaccgcccgcgcgggcggccggggggcccggggcccgggg
                                                                    *                                       

Query   LRADGSSECGAGAGAGQRGRPDRRLPVASGNGCRVPEPLLFTWPFFPGAELWTGLKKGPPRKLKFPEPHVVLEELKKYLS
        |||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Target  LRADGSSECGPGAGAGQRGPPDRRLPVASGNGCRVPEPLRFTWPFFPGAELWTGLKKGPPRKLKFPEPHVVLEELKKYLS
        ccgggaagtgcgggggccgccgccccggtgagtcgcgctctatcttcgggctagcaagcccacatcgccggcggcaatct
        tgcagggaggcgcgcgaggccaggtctccgagggtcactgtcgcttcgcatgcgtaagccgatatcacatttaataaatc
        gccccctgcggcggcagcgtaccccggtggcccgtagggccggtccacggcggttgggcacacgtggtcggggggggctg
                                                                                        
 Sequence until next stop: 
TAG
 * 

 Distance CDS-SECIS: 763 ; UGA-SECIS: 1120

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = - Positions = 49236 - 49169
 Found by:  Infernal (score=26.38) Covels (score=23.93)
 Stem2 length = 9   Apical loop length = 9   Insertion in stem2 = 0, 0
 Free Energy = -15.62
 Type = 1

         ..(((((((.......(((((((((((((((...............)))))))))))))))..........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuu-u-uuucaugaccggc
         ...(((({(---....([[{((((({((((......--------...))))})))))}]])......-...)}))))...
 target  AUUGGAGCG---UUUAUGACGGGACGUGGCCAAACU--------UCAGUCAGGUCCCCGAAGCUGUG-GUUUCCUCCCCU
                         ****           ^^^                       ****