genewise output
Score 16.27 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000014_1.0    7 KRKAEAAVVAVAEKREKL                                
                     + KAE AV A   +RE L                                
                     REKAELAVAAPPARREAL                                
NIVO01034600.1:72735 agaggcggggccgacggc                                
                     gaacatctcccccggact                                
                     ggaaggtatcttcacgcg                                


//
>NIVO01034600.1:subseq(4978439,100353).pep
REKAELAVAAPPARREAL
//
>NIVO01034600.1:subseq(4978439,100353).[72735:72788].sp
AGGGAGAAAGCAGAGCTGGCTGTAGCTGCCCCTCCTGCCAGACGCGAGGCCCTG
//
NIVO01034600.1:subseq(4978439,100353)	GeneWise	match	72735	72788	16.27	+	.	NIVO01034600.1:subseq(4978439,100353)-genewise-prediction-1
NIVO01034600.1:subseq(4978439,100353)	GeneWise	cds	72735	72788	0.00	+	0	NIVO01034600.1:subseq(4978439,100353)-genewise-prediction-1
//

genewise output
Score 175.43 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000014_1.0    1 MAPRGRKRKAEAAVVAVAEKREKLANGGEG-MEEATVVIEH         
                     MA RGRKRKAEAA+ A AEKREK A G EG     +VVIEH         
                     MASRGRKRKAEAALAAAAEKREKPAGGQEGEVAGPSVVIEH         
NIVO01034600.1-50574 agtcgaacaggggcgggggacgacgggcggggggcaggagc         
                     tccgggagacacctccccaagaaccggaagatcgcgtttaa         
                     ggccgggggcggggctgcggggggcccgggaggggccccgc         


SPP00000014_1.0   41                           TSXRVYGRNAAALSQALRLEAPE 
                                               TSXRVYGRNAAALSQALRL+APE 
                                C:C[tgc]       TSXRVYGRNAAALSQALRLQAPE 
NIVO01034600.1-50451 TGGTGAGCG  Intron 1   CAGCaatcgtgcagggcacgccccgcg 
                       <2-----[50449:50367]-2> cgggtaggaccctgactgtacca 
                                               gcaaccgcccgcgcgggcggccg 


SPP00000014_1.0   65 LPVKVNPTKPRRGSFEVTLLRPDGS                         
                     L VKVNP +PRRGSFEVTLLR DGS                         
                     LAVKVNPARPRRGSFEVTLLRADGS          S:S[agc]       
NIVO01034600.1-50296 cggagacgaccagatggacccgggaAGTGAGTG  Intron 2       
                     tctataccgcggggtatcttgcagg <1-----[50220:50098]    
                     gggggcccggggcccgggggccccc                         


SPP00000014_1.0   90      AELWTGIKKGPPRKLKFPEPQEVVEELKKYLS             
                          AELWTG+KKGPPRKLKFPEP  V+EELKKYLS             
                          AELWTGLKKGPPRKLKFPEPHVVLEELKKYLS             
NIVO01034600.1-50100 CAGGCggctagcaagcccacatcgccggcggcaatct             
                     -1>  catgcgtaagccgatatcacatttaataaatc             
                          ggcggttgggcacacgtggtcggggggggctg             


//
Making a C in phase 2 intron
Making a S in phase 1 intron
>NIVO01034600.1:subseq(4978439,100353).pep
MASRGRKRKAEAALAAAAEKREKPAGGQEGEVAGPSVVIEHCTSXRVYGRNAAALSQALR
LQAPELAVKVNPARPRRGSFEVTLLRADGSSAELWTGLKKGPPRKLKFPEPHVVLEELKK
YLS
//
>NIVO01034600.1:subseq(4978439,100353).[50574:49998].sp
ATGGCGTCCCGCGGGAGGAAGCGGAAGGCCGAGGCGGCGCTGGCCGCTGCGGCCGAGAAG
CGGGAGAAGCCGGCCGGCGGCCAGGAGGGGGAAGTGGCGGGGCCGAGCGTCGTCATCGAG
CACTGCACGAGCTGACGAGTCTACGGGCGCAACGCCGCGGCCCTGAGCCAGGCGCTGCGC
CTGCAGGCCCCCGAGCTGGCGGTGAAGGTGAACCCCGCCAGGCCGCGGAGGGGCAGCTTC
GAGGTGACGCTGCTGCGCGCCGACGGCAGCAGCGCGGAGCTCTGGACGGGTCTTAAGAAG
GGGCCCCCACGCAAACTCAAGTTTCCGGAGCCTCACGTGGTGCTGGAGGAGCTGAAGAAG
TACCTTTCG
//
NIVO01034600.1:subseq(4978439,100353)	GeneWise	match	50574	50000	175.43	-	.	NIVO01034600.1:subseq(4978439,100353)-genewise-prediction-1
NIVO01034600.1:subseq(4978439,100353)	GeneWise	cds	50574	50450	0.00	-	0	NIVO01034600.1:subseq(4978439,100353)-genewise-prediction-1
NIVO01034600.1:subseq(4978439,100353)	GeneWise	intron	50449	50367	0.00	-	.	NIVO01034600.1:subseq(4978439,100353)-genewise-prediction-1
NIVO01034600.1:subseq(4978439,100353)	GeneWise	cds	50366	50221	0.00	-	1	NIVO01034600.1:subseq(4978439,100353)-genewise-prediction-1
NIVO01034600.1:subseq(4978439,100353)	GeneWise	intron	50220	50098	0.00	-	.	NIVO01034600.1:subseq(4978439,100353)-genewise-prediction-1
NIVO01034600.1:subseq(4978439,100353)	GeneWise	cds	50097	50000	0.00	-	2	NIVO01034600.1:subseq(4978439,100353)-genewise-prediction-1
//