Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../SelH-human.fa -t SelH-NIVO01034600.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000014_1.0 # Protein # Selenoprotein H (SelH) # Homo sapiens # Complete
        Target: NIVO01034600.1:subseq(4978439,100353) Ammotragus lervia isolate NAZ scaffold37_len5366835_cov71, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 474
   Query range: 0 -> 122
  Target range: 50574 -> 49999

     1 : MetAlaProArgGlyArgLysArgLysAlaGluAlaAlaValValAlaValAlaGluLys :    20
         |||||| !!||||||||||||||||||||||||||||||:!!!.!|||!.!|||||||||
         MetAlaSerArgGlyArgLysArgLysAlaGluAlaAlaLeuAlaAlaAlaAlaGluLys
 50574 : ATGGCGTCCCGCGGGAGGAAGCGGAAGGCCGAGGCGGCGCTGGCCGCTGCGGCCGAGAAG : 50517

    21 : ArgGluLysLeuAlaAsnGlyGlyGluGly<->MetGluGluAlaThrValValIleGlu :    39
         |||||||||! !|||..!|||  !||||||   :!!! !! ! !!!:!||||||||||||
         ArgGluLysProAlaGlyGlyGlnGluGlyGluValAlaGlyProSerValValIleGlu
 50516 : CGGGAGAAGCCGGCCGGCGGCCAGGAGGGGGAAGTGGCGGGGCCGAGCGTCGTCATCGAG : 50457

    40 : His{Cy}  >>>> Target Intron 1 >>>>  {s}ThrSerUnkArgValTyrGly :    48
         |||{||}            83 bp            {|}||||||   ||||||||||||
         His{Cy}++                         ++{s}ThrSer***ArgValTyrGly
 50456 : CAC{TG}gt.........................ag{C}ACGAGCTGACGAGTCTACGGG : 50347

    49 : ArgAsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGluAlaProGluLeuProValLys :    68
         ||||||||||||||||||||||||||||||||||||:!!|||||||||||| !!||||||
         ArgAsnAlaAlaAlaLeuSerGlnAlaLeuArgLeuGlnAlaProGluLeuAlaValLys
 50346 : CGCAACGCCGCGGCCCTGAGCCAGGCGCTGCGCCTGCAGGCCCCCGAGCTGGCGGTGAAG : 50287

    69 : ValAsnProThrLysProArgArgGlySerPheGluValThrLeuLeuArgProAspGly :    88
         |||||||||.!!!:!|||||||||||||||||||||||||||||||||||| !!||||||
         ValAsnProAlaArgProArgArgGlySerPheGluValThrLeuLeuArgAlaAspGly
 50286 : GTGAACCCCGCCAGGCCGCGGAGGGGCAGCTTCGAGGTGACGCTGCTGCGCGCCGACGGC : 50227

    89 : Ser{S}  >>>> Target Intron 2 >>>>  {er}AlaGluLeuTrpThrGlyIle :    97
         |||{|}            123 bp           {||}||||||||||||||||||:!!
         Ser{S}++                         ++{er}AlaGluLeuTrpThrGlyLeu
 50226 : AGC{A}gt.........................ag{GC}GCGGAGCTCTGGACGGGTCTT : 50077

    98 : LysLysGlyProProArgLysLeuLysPheProGluProGlnGluValValGluGluLeu :   117
         |||||||||||||||||||||||||||||||||||||||!!.! !|||:!!|||||||||
         LysLysGlyProProArgLysLeuLysPheProGluProHisValValLeuGluGluLeu
 50076 : AAGAAGGGGCCCCCACGCAAACTCAAGTTTCCGGAGCCTCACGTGGTGCTGGAGGAGCTG : 50017

   118 : LysLysTyrLeuSer :   122
         |||||||||||||||
         LysLysTyrLeuSer
 50016 : AAGAAGTACCTTTCG : 50000

vulgar: SPP00000014_1.0 0 122 . NIVO01034600.1:subseq(4978439,100353) 50574 49999 - 474 M 30 90 G 0 3 M 10 30 S 0 2 5 0 2 I 0 79 3 0 2 S 1 1 M 48 144 S 0 1 5 0 2 I 0 119 3 0 2 S 1 2 M 32 96
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	gene	50000	50574	474	-	.	gene_id 1 ; sequence SPP00000014_1.0 ; gene_orientation +
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	cds	50450	50574	.	-	.	
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	exon	50450	50574	.	-	.	insertions 3 ; deletions 0
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	splice5	50448	50449	.	-	.	intron_id 1 ; splice_site "GT"
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	intron	50367	50449	.	-	.	intron_id 1
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	splice3	50367	50368	.	-	.	intron_id 0 ; splice_site "AG"
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	cds	50221	50366	.	-	.	
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	exon	50221	50366	.	-	.	insertions 0 ; deletions 0
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	splice5	50219	50220	.	-	.	intron_id 2 ; splice_site "GT"
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	intron	50098	50220	.	-	.	intron_id 2
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	splice3	50098	50099	.	-	.	intron_id 1 ; splice_site "AG"
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	cds	50000	50097	.	-	.	
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	exon	50000	50097	.	-	.	insertions 0 ; deletions 0
NIVO01034600.1:subseq(4978439,100353)	exonerate:protein2genome:local	similarity	50000	50574	474	-	.	alignment_id 1 ; Query SPP00000014_1.0 ; Align 50575 1 90 ; Align 50482 31 30 ; Align 50366 42 144 ; Align 50096 91 96
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis