_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:QUE_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 1e-19
 Query name: gi|820980696|ref|XP_012371964.1| PREDICTED: 15 kDa selenoprotein, partial [Octodon degus]
 Query range: 8-145  (total 145)

 Target: /data/www-rg/seblastian_results/804263788/tempfiles/temptarget.fasta
 Chromosome: your_sequence Strand: +
 Positions:
 -Exon 1  56295        56465
 -Exon 2  71626        71689
 -Exon 3  83104        83153
 -Exon 4  85594        85722

 Redox box: no

Query   SVSAFKEQFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKK <---Intron---> LYAGAILEVCGUKLGRFPQVQA <---
         |||   /||||/|||||||||||||||||||||||||||||||||||||||||||| <  15160bp   > |||||||||||||||||||||| <  1
Target  QVSALGAEFSSESCRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEAQFETKK                LYAGAILEVCGUKLGRFPQVQA     
        cgtgtgggtttgttagtgttaatctattgtcgctaccccgcgtagttcgggctgaaa                ctgggacggtgtatgatccgcg     
        atcctgcatccacggatgtcgattggcgattgatattatacagggggaaacatacaa                tacgcttatgggatggtcata      
        gctagaagtcagtcagatccccgccccttgtagcctgggttctagctgaaaatatag                gttatttactaaagggctaca      
                                                                                            *               

Query   Intron---> FVRSDKPKLFRGLQIK <---Intron---> YVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERI
        1414bp   > ||||||||||/||||| <   2440bp   > |||||||||||||||||||||||||||||||||||||||||||
Target             FVRSDKPKLFKGLQIK                YVRGSDPVLKLLDDSGNIAEELSILKWNTDSVEEFLSEKLERI
                   tgaagacactagccaa                tgcgtgcgcactggagaagggcaacataagagggtcagatgca
                  cttggaacattagtata                atggcacttattaaggatcaatgttagacagtaattgaatagt
                  tccgttacaacaagacg                ttctactgagtgcctgcttaaacccagcactaaacgtgggaca
                                                                                              
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 573 ; UGA-SECIS: 780

------- SECIS element -- id:1 -- grade:A ----
 Chromosome = your_sequence Strand = + Positions = 86296 - 86373
 Found by:  Infernal (score=31.23) Covels (score=24.94)
 Stem2 length = 10   Apical loop length = 15   Insertion in stem2 = 0, 1
 Free Energy = -16.46
 Type = 1

         ..(((((((.......(((((((((((((((...............))))))))).)))))).........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcCcuuuuuggggcgggccagg-cCuGAUGuuu-uuucaugaccggc
         (((((((((((.....{[[(({(((((((((...............))))))))).}))]]}.....-)-))))))))))
 target  CAAAGAUUUGCAUUAAUGAAGACUACACAGAAAACCUUCCUGAGGAUUUGUGUAGACCUGAUAUUUA-G-CAGAUUUUUG
                         ****           ^^^                        ****