genewise output
Score 193.26 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000013_1.0    4 MAAGPSGCLVPAFGLRLLLATVLQA                       V 
                     MA  P G L PAFGLRLLLATVLQ                        V 
                     MAGRPDGWLGPAFGLRLLLATVLQT                       V 
NIVO01070360.1:50009 aggccggtcgcgtgcccccgagccaGTGAGTG  Intron 1   CAGg 
                     tcggcaggtgcctgtgtttccttac<0-----[50084:56297]-0>t 
                     ggcggtagtcggtggaggggcgtgg                       c 


SPP00000013_1.0   30 SAFGAEFSSEACRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEA 
                     SA+GAEFSSE+CRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEA 
                     SALGAEFSSESCRELGFSSNLLCSSCDLLGQFNLLQLDPDCRGCCQEEA 
NIVO01070360.1:56301 tgtgggtttgttagtgttaatctattgtcgctaccccgcgtagttcggg 
                     cctgcatccacggatgtcgattggcgattgatattatacagggggaaac 
                     tagaagtcagtcagatccccgccccttgtagcctgggttctagctgaaa 


SPP00000013_1.0   79 QFETKK                       LYAGAILEVCGXKLGRFPQV 
                     QFETKK                       LYAGAILEVCGXKLGRFPQV 
                     QFETKK                       LYAGAILEVCGXKLGRFPQV 
NIVO01070360.1:56448 ctgaaaGTACTGC  Intron 2   CAGctgggacggtgtatgatccg 
                     atacaa<0-----[56466:71625]-0>tacgcttatgggatggtcat 
                     atatag                       gttatttactaaagggctac 


SPP00000013_1.0  105 Q                          CPWFRPCIKAFGRQWEHC     
                     Q                          C  FRPC KAFGRQWEHC     
                     Q          V:V[gta]        CSRFRPCAKAFGRQWEHC     
NIVO01070360.1:71686 cGGTGTGTA  Intron 3   TAGTAttctactgagtgcctgct     
                     a <1-----[71690:85593]-1>  gcgtgcgcactggagaag     
                     a                          tggcacttattaaggatc     


//
Making a V in phase 1 intron
>NIVO01070360.1:subseq(671122,135649).pep
MAGRPDGWLGPAFGLRLLLATVLQTVSALGAEFSSESCRELGFSSNLLCSSCDLLGQFNL
LQLDPDCRGCCQEEAQFETKKLYAGAILEVCGXKLGRFPQVQVCSRFRPCAKAFGRQWEH
C
//
>NIVO01070360.1:subseq(671122,135649).[50009:85649].sp
ATGGCGGGCCGGCCGGATGGATGGCTTGGCCCGGCGTTTGGGCTGCGACTGCTGCTGGCG
ACCGTGCTTCAGACGGTCTCTGCATTGGGAGCAGAGTTTTCCTCAGAGTCTTGCAGAGAG
TTAGGTTTCTCCAGCAACTTGCTCTGCAGCTCCTGTGATTTGCTTGGACAGTTCAACCTT
CTGCAGCTGGATCCTGACTGTAGAGGGTGCTGTCAGGAAGAAGCACAATTTGAAACTAAA
AAGCTGTATGCTGGAGCTATTCTTGAAGTCTGTGGATGAAAATTGGGGAGGTTCCCTCAA
GTCCAAGTATGTTCGCGGTTCAGACCCTGTGCTAAAGCTTTTGGACGACAGTGGGAACAT
TGC
//
NIVO01070360.1:subseq(671122,135649)	GeneWise	match	50009	85649	193.26	+	.	NIVO01070360.1:subseq(671122,135649)-genewise-prediction-1
NIVO01070360.1:subseq(671122,135649)	GeneWise	cds	50009	50083	0.00	+	0	NIVO01070360.1:subseq(671122,135649)-genewise-prediction-1
NIVO01070360.1:subseq(671122,135649)	GeneWise	intron	50084	56297	0.00	+	.	NIVO01070360.1:subseq(671122,135649)-genewise-prediction-1
NIVO01070360.1:subseq(671122,135649)	GeneWise	cds	56298	56465	0.00	+	0	NIVO01070360.1:subseq(671122,135649)-genewise-prediction-1
NIVO01070360.1:subseq(671122,135649)	GeneWise	intron	56466	71625	0.00	+	.	NIVO01070360.1:subseq(671122,135649)-genewise-prediction-1
NIVO01070360.1:subseq(671122,135649)	GeneWise	cds	71626	71689	0.00	+	0	NIVO01070360.1:subseq(671122,135649)-genewise-prediction-1
NIVO01070360.1:subseq(671122,135649)	GeneWise	intron	71690	85593	0.00	+	.	NIVO01070360.1:subseq(671122,135649)-genewise-prediction-1
NIVO01070360.1:subseq(671122,135649)	GeneWise	cds	85594	85649	0.00	+	2	NIVO01070360.1:subseq(671122,135649)-genewise-prediction-1
//

genewise output
Score 19.45 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000013_1.0   17 GLRLLLATVLQAVSAFGAEFSSEACREL                      
                     GL +LL  +L+A +  G  FS+  C  L                      
                     GLPVLLEVILKAPAVSGKGFSNLRCGHL                      
NIVO01070360.1-48589 gtcgctggacagcggtgagttatatgcc                      
                     gtctttatttaccctcgagtcatgggat                      
                     cgttcgacagataagacggtttgatgcg                      


//
>NIVO01070360.1:subseq(671122,135649).pep
GLPVLLEVILKAPAVSGKGFSNLRCGHL
//
>NIVO01070360.1:subseq(671122,135649).[48589:48504].sp
GGCTTGCCTGTTCTCTTGGAAGTCATACTGAAAGCTCCAGCAGTGTCAGGCAAGGGGTTT
TCTAATTTGAGATGTGGGCACCTG
//
NIVO01070360.1:subseq(671122,135649)	GeneWise	match	48589	48506	19.45	-	.	NIVO01070360.1:subseq(671122,135649)-genewise-prediction-1
NIVO01070360.1:subseq(671122,135649)	GeneWise	cds	48589	48506	0.00	-	0	NIVO01070360.1:subseq(671122,135649)-genewise-prediction-1
//