Command line: [exonerate --exhaustive yes -m p2g --showtargetgff -q ../Sel15-human.fa -t Sel15-NIVO01070360.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000013_1.0 # Protein # Selenoprotein 15 (Sel15) # Homo sapiens # Complete
        Target: NIVO01070360.1:subseq(671122,135649) Ammotragus lervia isolate NAZ scaffold3579_len949894_cov71, whole genome shotgun sequence
         Model: protein2genome:local
     Raw score: 564
   Query range: 0 -> 124
  Target range: 49999 -> 85649

     1 : MetValAlaMetAlaAlaGlyProSerGlyCysLeuValProAlaPheGlyLeuArgLeu :    20
         :!!!.!! !||||||!.! !!|||..!|||!! |||! !|||||||||||||||||||||
         ValAlaGluMetAlaGlyArgProAspGlyTrpLeuGlyProAlaPheGlyLeuArgLeu
 50000 : GTGGCAGAGATGGCGGGCCGGCCGGATGGATGGCTTGGCCCGGCGTTTGGGCTGCGACTG : 50057

    21 : LeuLeuAlaThrValLeuGlnAla  >>>> Target Intron 1 >>>>  ValSerA :    31
         |||||||||||||||||||||.!!           6214 bp           |||||||
         LeuLeuAlaThrValLeuGlnThr++                         ++ValSerA
 50058 : CTGCTGGCGACCGTGCTTCAGACGgt.........................aggtctctg : 56304

    32 : laPheGlyAlaGluPheSerSerGluAlaCysArgGluLeuGlyPheSerSerAsnLeuL :    51
         ||...|||||||||||||||||||||:!!|||||||||||||||||||||||||||||||
         laLeuGlyAlaGluPheSerSerGluSerCysArgGluLeuGlyPheSerSerAsnLeuL
 56305 : cattgggagcagagttTTCCTCAGAGTCTTGCAGAGAGTTAGGTTTCTCCAGCAACTTGC : 56364

    52 : euCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysA :    71
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         euCysSerSerCysAspLeuLeuGlyGlnPheAsnLeuLeuGlnLeuAspProAspCysA
 56365 : TCTGCAGCTCCTGTGATTTGCTTGGACAGTTCAACCTTCTGCAGCTGGATCCTGACTGTA : 56424

    72 : rgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys  >>>> Target Intro :    85
         |||||||||||||||||||||||||||||||||||||||||           15160 bp
         rgGlyCysCysGlnGluGluAlaGlnPheGluThrLysLys++                 
 56425 : GAGGGTGCTGTCAGGAAGAAGCACAATTTGAAACTAAAAAGgt................. : 56468

    86 : n 2 >>>>  LeuTyrAlaGlyAlaIleLeuGluValCysGlyUnkLysLeuGlyArgPh :   101
                   |||||||||||||||||||||||||||||||||   ||||||||||||||
                 ++LeuTyrAlaGlyAlaIleLeuGluValCysGly***LysLeuGlyArgPh
 56469 : ........agcTGTATGCTGGAGCTATTCTTGAAGTCTGTGGATGAAAATTGGGGAGGTT : 71674

   102 : eProGlnValGln{V}  >>>> Target Intron 3 >>>>  {al}CysProTrpPh :   110
         |||||||||||||{|}           13904 bp          {||}||| !! !!||
         eProGlnValGln{V}++                         ++{al}CysSerArgPh
 71675 : CCCTCAAGTCCAA{G}gt.........................ag{TA}TGTTCGCGGTT : 85605

   111 : eArgProCysIleLysAlaPheGlyArgGlnTrpGluHisCys :   124
         ||||||||||  !||||||||||||||||||||||||||||||
         eArgProCysAlaLysAlaPheGlyArgGlnTrpGluHisCys
 85606 : CAGACCCTGTGCTAAAGCTTTTGGACGACAGTGGGAACATTGC : 85649

vulgar: SPP00000013_1.0 0 124 . NIVO01070360.1:subseq(671122,135649) 49999 85649 + 564 M 28 84 5 0 2 I 0 6210 3 0 2 M 56 168 5 0 2 I 0 15156 3 0 2 M 21 63 S 0 1 5 0 2 I 0 13900 3 0 2 S 1 2 M 18 54
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-17
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	gene	50000	85649	564	+	.	gene_id 1 ; sequence SPP00000013_1.0 ; gene_orientation +
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	cds	50000	50083	.	+	.	
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	exon	50000	50083	.	+	.	insertions 0 ; deletions 0
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	splice5	50084	50085	.	+	.	intron_id 1 ; splice_site "GT"
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	intron	50084	56297	.	+	.	intron_id 1
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	splice3	56296	56297	.	+	.	intron_id 0 ; splice_site "ag"
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	cds	56298	56465	.	+	.	
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	exon	56298	56465	.	+	.	insertions 0 ; deletions 0
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	splice5	56466	56467	.	+	.	intron_id 2 ; splice_site "GT"
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	intron	56466	71625	.	+	.	intron_id 2
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	splice3	71624	71625	.	+	.	intron_id 1 ; splice_site "ag"
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	cds	71626	71689	.	+	.	
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	exon	71626	71689	.	+	.	insertions 0 ; deletions 0
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	splice5	71690	71691	.	+	.	intron_id 3 ; splice_site "GT"
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	intron	71690	85593	.	+	.	intron_id 3
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	splice3	85592	85593	.	+	.	intron_id 2 ; splice_site "AG"
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	cds	85594	85649	.	+	.	
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	exon	85594	85649	.	+	.	insertions 0 ; deletions 0
NIVO01070360.1:subseq(671122,135649)	exonerate:protein2genome:local	similarity	50000	85649	564	+	.	alignment_id 1 ; Query SPP00000013_1.0 ; Align 50000 1 84 ; Align 56298 29 168 ; Align 71626 85 63 ; Align 85596 107 54
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis