genewise output Score 19.67 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000254_2.0 376 TLRTLDKHCSRAVTQLGSMLFTRQVS TL++L +H S+A L S F Q+S TLKSLQQHSSKASILLRSAFFIVQLS NIVO01007502.1121384 acaaccccatagtaccctgttagcct ctagtaaagcacctttgccttttatc tcgttaactaaaattgcatctacaca // >NIVO01007502.1:subseq(1628487,134741).pep TLKSLQQHSSKASILLRSAFFIVQLS // >NIVO01007502.1:subseq(1628487,134741).[121384:121461].sp ACTCTCAAGAGTCTTCAACAACACAGTTCAAAAGCATCAATTCTTCTGCGCTCAGCTTTC TTTATAGTCCAACTCTCA // NIVO01007502.1:subseq(1628487,134741) GeneWise match 121384 121461 19.67 + . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 121384 121461 0.00 + 0 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 // genewise output Score 1030.83 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000254_2.0 1 MNREFFAAGERLVSPAYVRQGCEARRSHEHLMRLLLEK MNRE+FAAGERLVSPAYVRQGCEARRSHEHLMRLLLEK MNRELFAAGERLVSPAYVRQGCEARRSHEHLMRLLLEK NIVO01007502.1-84741 aacgctggggccgtcgtgccgtggcctcgccaccccga tagattccgagttcccatgaggacggcaaattgtttaa gccgccggcggggggtcgggctgcccgcgccggatggg SPP00000254_2.0 39 GKCPEDGWDESTLELFLHELAIMDSN GKCPEDGWDESTLELFLHELAIMDSN GKCPEDGWDESTLELFLHELAIMDSN NIVO01007502.1-84627 GTACTGG Intron 1 AAGgatcgggtggaacgcttcgcgaagaa <0-----[84627:83258]-0>gagcaaggaagctatttaatcttaga cgtagttgtatgtactatatatgccc SPP00000254_2.0 65 NFLGNCGVGEREGRVASALVARRHY NFLGNCGVGEREGRVASALVARRHY NFLGNCGVGEREGRVASALVARRHY R:R[agg] NIVO01007502.1-83179 atcgatggggaggaggtgtggccctAGGTATGTT Intron 2 attgaggtgagaggtcccttcggaa <2-----[83102:81371] tcgctttgaagaaagataattgatc SPP00000254_2.0 90 FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA FIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLA NIVO01007502.1-81373 TAGGtacgagctggatggccagggtactaaaaattgcgaaatg -2> ttagtggcgatcctacaccgcgttaatcactttattatc cttataaatttgtgacatattctgcatcttgcgccaagt SPP00000254_2.0 130 VHTVTSCFVVPMATGMSLTLCFL VHTVTSCFVVPMATGMSLTLCFL G:G[ggt] VHTVTSCFVVPMATGMSLTLCFL NIVO01007502.1-81252 GGTATGTA Intron 3 TAGGTgcagaattggcagagaacacttt <1-----[81251:80940]-1> tactcggtttctccgtgtctgtt ctagccctatagattgtacgtca SPP00000254_2.0 154 TLRHRRPKAKYIIWPRIDQKSCFKSMITA TLRHRRPKAKYIIWPRIDQKSCFKSMITA TLRHRRPKAKYIIWPRIDQKSCFKSMITA NIVO01007502.1-80868 atccaacagataatccagcatttataaag ctgaggcacaattgcgtaaacgtacttcc agacaaagagttagaaacggtctacgcta SPP00000254_2.0 183 FEPVVIENILEGDELRTDLKAVE FEPVVIENILEGDELRTDL+AVE G:G[ggt] FEPVVIENILEGDELRTDLEAVE NIVO01007502.1-80781 GGTAAAAA Intron 4 TAGGTtgcggagaatggggccagcgggg <1-----[80780:78310]-1> tactttaattagaatgcatacta tgtggagctaattggcacgaagg SPP00000254_2.0 207 AKVQELGPDHVLCVHSTTSCFAPRVPD AKVQELGPDHVLCVHSTTSCFAPRVPD AKVQELGPDHVLCVHSTTSCFAPRVPD R:R[agg] NIVO01007502.1-78238 gagcgcgcgcgctgctaatttgcagcgAGGTAAATG Intron 5 cataatgcaattgtaccccgtccgtca <2-----[78155:74105] tacgatgttctgttttcgctttaagtt SPP00000254_2.0 234 LEELAVICANYGIPHIVNNAYGVQSSKCMHLIQQ LEELAVICANYGIPHIVNNAYGVQSSKCMHLIQQ LEELAVICANYGIPHIVNNAYGVQSSKCMHLIQQ NIVO01007502.1-74107 TAGGtggcggatgatgaccagaagtggcttataccacc -2> taatcttgcaagtcattaacagtaccagtattaa aaagtgtttttctatacctttagatagcgcctgg SPP00000254_2.0 269 GARVGRIDAFVQSLDKNFMVPVGGAI GARVGR+DAFVQSLDKNFMVPVGGAI GARVGRVDAFVQSLDKNFMVPVGGAI NIVO01007502.1-74001 GTAAGAG Intron 6 TAGggcggagggtgcatgaatagcgggga <0-----[74001:65819]-0>gcgtggtacttagtaaatttctggct attttaattctgcgcattgtaattta SPP00000254_2.0 295 IAGFNDSFIQEISKMYP RASASP IAGFNDSFIQEISKMYP RASASP IAGFNDSFIQEISKMYP G:G[gga] RASASP NIVO01007502.1-65740 aggtagttacgaaaatcGGTAAATA Intron 7 CAGGAagtgtc tcgtaacttaatgatac <1-----[65688:65564]-1> gccccc ttctttcctgaccggta atatat SPP00000254_2.0 319 SLDVLITLLSLGSNGYKKLLKERK EM SLDVLITLLSLGSNGYKKLLKERK EM SLDVLITLLSLGSNGYKKLLKERK EM NIVO01007502.1-65543 ttggcaatttcgtagtaactagaaGTAAGGT Intron 8 CAGga ctatttcttctgcagaaattaaga<0-----[65471:53545]-0>at tatctttaaataatccggaaaaag ag SPP00000254_2.0 345 FSYLSNQLKKLSEAYNERLLHTPHNPISL FSYLSNQLKKLSEAY+ERLLHTPHNPISL FSYLSNQLKKLSEAYSERLLHTPHNPISL NIVO01007502.1-53538 tttttaccaactggtagactcaccacatt tcatcaataatcacagagttaccaactct tctgccaagggaacctaaggtatctcata SPP00000254_2.0 374 MTLRTLDKHCSRAVTQLGSMLFT MTL+TLDKHCS+AVTQLGSMLFT A:A[gct] MTLKTLDKHCSKAVTQLGSMLFT NIVO01007502.1-53451 GGTAATTT Intron 9 CAGCTaacaacgactaaggaccgtacta <1-----[53450:51715]-1> tctactaaaggactcatgctttc gatacatactcatctgtccgtta SPP00000254_2.0 398 RQVSGA VVPLGSMQTVSGYTFRG RQVSGA VVPLGSMQTVSGYTFRG RQVSGA R:R[agg] VVPLGSMQTVSGYTFRG NIVO01007502.1-51643 acgtggAGGTAAGTA Intron 10 CAGGggccgtacagagtatag gatcgc <2-----[51623:50298]-2> ttctgctactggactgg agttac ttttgtggtgtcctcac SPP00000254_2.0 422 FMSHTNNYPCAYLNAASAIGMKTQDVDLFIKRLDKCLKTVRKEQNKESD FMSH+NNYPCAYLNAASAIGMKTQDVDLF+KRLDKCLKTVRKEQNKESD FMSHSNNYPCAYLNAASAIGMKTQDVDLFVKRLDKCLKTVRKEQNKESD NIVO01007502.1-50245 tatctaatctgtcaggtgagaaacgggttgaacgattaagaagcaagag ttcacaaacgcatacccctgtacaatatttagtaagtactgaaaaaaga tgatattctttccttgactaggagtgcgcagatcgtagacagaatagtt SPP00000254_2.0 471 ISGVDNNDKTEDVDIEEMALKLDNVCLDTCQDS +S VDNNDKTEDV+IEE+ALKLD V LDTCQDS VSEVDNNDKTEDVNIEEVALKLDTVRLDTCQDS NIVO01007502.1-50098 gtgggaagaagggaaggggtacgagccgatcgt tcataaaaacaatataatctatactgtacgaac atatcttcatatgtaaagtaaattattcacgtt // Making a R in phase 2 intron Making a G in phase 1 intron Making a G in phase 1 intron Making a R in phase 2 intron Making a G in phase 1 intron Making a A in phase 1 intron Making a R in phase 2 intron >NIVO01007502.1:subseq(1628487,134741).pep MNRELFAAGERLVSPAYVRQGCEARRSHEHLMRLLLEKGKCPEDGWDESTLELFLHELAI MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNS LVLDIIKLAGVHTVTSCFVVPMATGMSLTLCFLTLRHRRPKAKYIIWPRIDQKSCFKSMI TAGFEPVVIENILEGDELRTDLEAVEAKVQELGPDHVLCVHSTTSCFAPRVPDRLEELAV ICANYGIPHIVNNAYGVQSSKCMHLIQQGARVGRVDAFVQSLDKNFMVPVGGAIIAGFND SFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQLKKLSEAYS ERLLHTPHNPISLAMTLKTLDKHCSKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFR GFMSHSNNYPCAYLNAASAIGMKTQDVDLFVKRLDKCLKTVRKEQNKESDVSEVDNNDKT EDVNIEEVALKLDTVRLDTCQDS // >NIVO01007502.1:subseq(1628487,134741).[84741:49998].sp ATGAACCGCGAGCTCTTCGCGGCGGGCGAGCGGCTGGTGTCGCCGGCTTACGTGCGGCAG GGCTGTGAGGCCCGCCGCTCGCACGAGCACCTCATGCGGCTACTTCTGGAGAAGGGCAAG TGTCCAGAGGATGGTTGGGATGAAAGTACGCTTGAACTCTTTTTACATGAACTTGCAATT ATGGACAGCAACAATTTCCTGGGCAATTGTGGTGTGGGAGAAAGGGAAGGAAGAGTGGCA TCTGCATTAGTTGCTCGGCGACATTACAGGTTCATTCATGGAATTGGACGATCAGGTGAT ATTTCGGCTGTGCAACCCAAAGCTGCAGGTTCTAGCCTTTTGAACAAAATTACCAATTCT TTGGTCCTGGACATCATAAAATTGGCTGGTGTCCATACAGTGACCAGCTGCTTTGTAGTT CCAATGGCAACTGGTATGAGTCTAACCCTGTGTTTCTTAACATTGCGACACAGAAGACCA AAGGCAAAGTATATTATATGGCCACGAATAGACCAGAAGTCTTGCTTTAAATCCATGATC ACTGCAGGTTTTGAGCCTGTGGTGATAGAGAACATTTTAGAAGGTGATGAGCTGCGCACA GACCTGGAAGCAGTGGAGGCTAAAGTCCAGGAACTTGGGCCTGATCACGTTCTGTGTGTT CATTCTACCACGTCCTGTTTTGCTCCAAGAGTGCCTGATAGGTTAGAAGAACTGGCTGTG ATTTGTGCTAATTATGGCATTCCACATATAGTCAACAATGCTTATGGAGTGCAATCTTCA AAGTGCATGCACCTCATTCAGCAGGGAGCTCGTGTTGGTAGAGTAGATGCTTTCGTTCAG AGCTTGGACAAAAATTTTATGGTTCCAGTAGGTGGTGCTATAATTGCTGGCTTTAATGAT TCCTTCATTCAGGAAATCAGCAAGATGTATCCAGGAAGAGCTTCAGCTTCACCTTCTTTA GATGTCCTTATTACTTTATTATCACTTGGATCAAATGGCTACAAGAAGCTATTAAAAGAA AGAAAGGAAATGTTTTCCTATTTGTCCAACCAACTAAAGAAGCTGTCAGAAGCCTACAGT GAAAGACTGTTGCATACACCTCACAATCCCATATCTTTAGCTATGACACTTAAAACCCTA GATAAACACTGTAGCAAAGCTGTCACTCAGCTTGGCTCCATGCTTTTTACAAGACAGGTT TCTGGAGCCAGGGTTGTTCCTCTTGGGTCTATGCAGACTGTGAGTGGCTACACTTTCAGA GGCTTTATGTCACATTCAAATAATTACCCTTGTGCTTACCTCAATGCTGCGTCAGCCATT GGAATGAAGACACAGGATGTGGACTTGTTCGTAAAGAGACTTGACAAGTGTTTAAAGACA GTCAGAAAGGAACAAAATAAAGAGAGTGATGTATCTGAAGTTGACAATAATGACAAAACT GAAGATGTGAATATAGAAGAAGTGGCTTTAAAACTAGATACTGTACGTCTTGACACATGC CAGGATTCT // NIVO01007502.1:subseq(1628487,134741) GeneWise match 84741 50000 1030.83 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 84741 84628 0.00 - 0 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise intron 84627 83258 0.00 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 83257 83103 0.00 - 0 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise intron 83102 81371 0.00 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 81370 81252 0.00 - 1 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise intron 81251 80940 0.00 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 80939 80781 0.00 - 2 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise intron 80780 78310 0.00 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 78309 78156 0.00 - 2 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise intron 78155 74105 0.00 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 74104 74002 0.00 - 1 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise intron 74001 65819 0.00 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 65818 65689 0.00 - 0 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise intron 65688 65564 0.00 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 65563 65472 0.00 - 2 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise intron 65471 53545 0.00 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 53544 53451 0.00 - 0 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise intron 53450 51715 0.00 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 51714 51624 0.00 - 2 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise intron 51623 50298 0.00 - . NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 NIVO01007502.1:subseq(1628487,134741) GeneWise cds 50297 50000 0.00 - 1 NIVO01007502.1:subseq(1628487,134741)-genewise-prediction-1 //