genewise output
Score 20.53 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000033_1.0  215 TVVNPWIIIGGVATVVCQPNEFIMPDSAVVGDVLVLT             
                     TV  P +II G  T VC P   + P SA     L+++             
                     TVATPPMIIQGF-TTVCPPVTAVPPSSAASRKPLIMS             
NIVO01016939.1:50625 aggaccaaacgt aagtccgaggccttggtcactaaa             
                     ctcccctttagt cctgcctcctcccccccgactttg             
                     agataggacagt cctcaactacttcgaacagtgcgt             


//
>NIVO01016939.1:subseq(853875,54367).pep
TVATPPMIIQGFTTVCPPVTAVPPSSAASRKPLIMS
//
>NIVO01016939.1:subseq(853875,54367).[50625:50732].sp
ACAGTGGCAACTCCACCGATGATAATCCAAGGGTTTACCACCGTTTGCCCACCAGTCACT
GCAGTCCCTCCTTCCTCGGCAGCATCCCGAAAGCCTTTGATCATGAGT
//
NIVO01016939.1:subseq(853875,54367)	GeneWise	match	50625	50732	20.53	+	.	NIVO01016939.1:subseq(853875,54367)-genewise-prediction-1
NIVO01016939.1:subseq(853875,54367)	GeneWise	cds	50625	50732	0.00	+	0	NIVO01016939.1:subseq(853875,54367)-genewise-prediction-1
//

genewise output
Score 965.07 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000033_1.0    1 MAEASATGACGEAM---AAAEGSSGPAGLTLGRSFSNYRPFEPQALGLS 
                     MAE +ATGA GEAM   AA EGSSGP GL LGR FS+YRPFEPQALGLS 
                     MAEVAATGAGGEAMAAVAAGEGSSGPVGLPLGRGFSSYRPFEPQALGLS 
NIVO01016939.1-51319 agggggaggggggaggggggggttgcggtccgcgttatcctgccgtgca 
                     tcatcccgcggactcctccgagccgctgtctgggtcgagctacactgtg 
                     ggacggtcccagtggaggggaccgcggcgtacgccgccgccgcgggtcc 


SPP00000033_1.0   47 PSWRLTGFSGMKGXGCKVPQEALLKLLAGLTRPDVRPPLGRGLVGGQEE 
                     PSWRLTGFSGMKGXGCKVPQE LLKLLAGLTRP+V P  GRGLVGG EE 
                     PSWRLTGFSGMKGXGCKVPQETLLKLLAGLTRPEVLPAPGRGLVGGLEE 
NIVO01016939.1-51172 catccagttgaagtgtagccgaccaccggcaccggccgcgcgcgggcgg 
                     cgggtcgtcgtaggggatcaacttattcgtcgcattcccgggttggtaa 
                     gcggcccctcggcaccgccggggcacggaggaggggcggcgcgcactag 


SPP00000033_1.0   96 ASQEAGLPAGAGPSPTFPALGIGMDSCVIPLRHGGLSLVQTTDFFYPLV 
                      +QEAGLP  A PSP FP+LGIGMDSCVIPLRHGGLSLVQTTDFFYPLV 
                     TAQEAGLPVRAEPSPPFPSLGIGMDSCVIPLRHGGLSLVQTTDFFYPLV 
NIVO01016939.1-51025 agcgggccgaggcacctcacgagagttgaccacggcttgcaagtttccg 
                     ccaacgtctgcacgcctcgtgtgtacgttctgaggtcttaccattactt 
                     gcgactgggggacccccccgctggccccacgacgcgcgggcccctccgg 


SPP00000033_1.0  145 EDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMSEEEREKVTP 
                     EDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSM EEEREK+TP 
                     EDPYMMGRIACANVLSDLYAMGITECDNMLMLLSVSQSMPEEEREKITP 
NIVO01016939.1-50878 ggctaagcagtgagcagctgagaagtgaataccagacaacgggcgaaac 
                     aacattggtcgcattgatactgtcagaatttttgtgagtcaaagaatcc 
                     atctgggccatccggtcccggcttgttcgggaccccgtgtgggaagaaa 


SPP00000033_1.0  194 LMVKGFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFIMPDSA 
                     LM+KGFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFI+PDSA 
                     LMIKGFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFILPDSA 
NIVO01016939.1-50731 caaagtcgggggggaggaggcaggactaaaggggaggtccagtatcgag 
                     tttagtgaccaaggcctcggacttacgtttggtccttgacaatttcagc 
                     cgcactgttcgaagtagttgaggactgtcctatctaataataccgtccc 


SPP00000033_1.0  243 VVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKVKMVVSREEVELAYQEA 
                     VVGDVLVLTKPLGTQVAVNAHQWLDNPERWNK+KMVVSREEVEL YQEA 
                     VVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKIKMVVSREEVELGYQEA 
NIVO01016939.1-50584 gggggcgtaactgacgggagcctcgacgctaaaaaggtaggggcgtcgg 
                     ttgattttcactgcatctacaagtaacaggaatatttcgaatatgaaac 
                     ttgtgcgatacaacgatctccaggtttaagtgagggccaagaggttgac 


SPP00000033_1.0  292 MFNMATLNRTAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFV 
                     MFNMATLNR AAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFV 
                     MFNMATLNRIAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFV 
NIVO01016939.1-50437 ataagacaaagggcacatagcggagaagtgacgctcacgaccaaggttg 
                     ttatcctagtccgttactacacccatcgtgttgacaatcaaagaatctt 
                     gccgtcctattcgggcgttctacatccctctgtctgctaaaaatgcgtc 


SPP00000033_1.0  341 IHNLPIIAKMAAVSKASGRFGLLQGTSAETSGGLLICLPREQAARFCSE 
                     IHNLPIIAKMAA+SKASGRFGLLQGTSAETSGGLLICLPREQAARFCSE 
                     IHNLPIIAKMAAISKASGRFGLLQGTSAETSGGLLICLPREQAARFCSE 
NIVO01016939.1-50290 acaccaagaaggaaagagctgcccgatggatggccatccagcggctttg 
                     taatcttcatcctgacgggtgttagcccaccggtttgtcgaaccgtgca 
                     tttgcctcggtcccgccgcttcgaacaaattggagttgaaaaatcttaa 


SPP00000033_1.0  390 IKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGATAAVLAPD 
                     IKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGAT A LAP+ 
                     IKSSKYGEGHQAWIVGIVEKGNRTARIIDKPRVIEVLPRGAT-ATLAPE 
NIVO01016939.1-50143 aattatgggccgtaggaggagacagcaagaccgaggcccgga gacgcg 
                     taccaagagaacgttgttaagagccgttaacgttattcggcc cctcca 
                     catagtagttacgccttgaaacgacgctcgtcttgcattgct tttttg 


SPP00000033_1.0  439 SSNASSEPS                                         
                     +S+ASSEPS                                         
                     NSSASSEPS                                         
NIVO01016939.1-49999 atagttgca                                         
                     acgcccacg                                         
                     cctcctgtc                                         


//
>NIVO01016939.1:subseq(853875,54367).pep
MAEVAATGAGGEAMAAVAAGEGSSGPVGLPLGRGFSSYRPFEPQALGLSPSWRLTGFSGM
KGXGCKVPQETLLKLLAGLTRPEVLPAPGRGLVGGLEETAQEAGLPVRAEPSPPFPSLGI
GMDSCVIPLRHGGLSLVQTTDFFYPLVEDPYMMGRIACANVLSDLYAMGITECDNMLMLL
SVSQSMPEEEREKITPLMIKGFRDAAEEGGTAVTGGQTVVNPWIIIGGVATVVCQPNEFI
LPDSAVVGDVLVLTKPLGTQVAVNAHQWLDNPERWNKIKMVVSREEVELGYQEAMFNMAT
LNRIAAGLMHTFNAHAATDITGFGILGHSQNLAKQQRNEVSFVIHNLPIIAKMAAISKAS
GRFGLLQGTSAETSGGLLICLPREQAARFCSEIKSSKYGEGHQAWIVGIVEKGNRTARII
DKPRVIEVLPRGATATLAPENSSASSEPS
//
>NIVO01016939.1:subseq(853875,54367).[51319:49971].sp
ATGGCGGAAGTCGCGGCGACTGGCGCCGGCGGAGAGGCTATGGCGGCAGTGGCGGCGGGG
GAAGGCTCCTCGGGCCCGGTGGGCTTGCCTCTAGGCCGGGGCTTCTCGAGCTACCGGCCC
TTCGAGCCCCAGGCGTTGGGTCTCAGCCCGAGCTGGCGGCTCACCGGCTTCTCTGGCATG
AAGGGCTGAGGCTGCAAGGTCCCCCAGGAGACGCTGCTCAAACTCCTGGCGGGACTGACG
CGACCGGAGGTGCTGCCCGCGCCGGGCCGGGGCCTGGTCGGAGGCCTTGAAGAGACGGCC
CAGGAAGCCGGTCTGCCGGTGAGGGCGGAACCCAGCCCCCCCTTCCCCAGCCTGGGCATT
GGGATGGACTCCTGCGTCATACCCCTGAGACACGGGGGCCTGTCCTTGGTGCAGACCACC
GACTTCTTTTACCCCCTGGTGGAAGATCCCTATATGATGGGGCGCATCGCATGTGCCAAC
GTGCTGAGTGACCTCTACGCGATGGGCATTACTGAGTGTGATAACATGTTGATGCTACTC
AGCGTCAGCCAGAGTATGCCTGAGGAGGAGCGAGAAAAGATAACACCACTCATGATCAAA
GGCTTTCGGGATGCTGCCGAGGAAGGAGGGACTGCAGTGACTGGTGGGCAAACGGTGGTA
AACCCTTGGATTATCATCGGTGGAGTTGCCACTGTAGTATGTCAACCAAATGAATTCATC
TTGCCTGACAGCGCCGTTGTTGGGGATGTGCTCGTGTTAACTAAACCCTTAGGAACCCAG
GTAGCTGTCAATGCCCACCAATGGCTGGATAATCCTGAACGATGGAATAAGATAAAGATG
GTGGTCTCCAGAGAAGAGGTAGAGCTGGGTTATCAGGAAGCCATGTTCAACATGGCTACC
CTCAATAGAATTGCTGCCGGGCTGATGCACACGTTTAATGCCCATGCAGCCACAGATATC
ACCGGCTTTGGCATTCTGGGTCACTCTCAGAACCTTGCAAAACAACAAAGAAATGAGGTC
TCGTTTGTCATTCATAATCTGCCCATCATTGCCAAGATGGCTGCCATCAGCAAGGCCAGC
GGGCGCTTTGGTCTCCTGCAAGGAACCTCAGCAGAAACTTCTGGGGGGCTACTGATTTGT
CTGCCAAGAGAACAAGCAGCTCGCTTTTGTTCAGAAATCAAATCTTCAAAGTATGGAGAG
GGTCATCAAGCCTGGATCGTCGGTATTGTGGAAAAAGGAAACCGGACAGCCCGGATCATT
GACAAGCCTCGCGTTATTGAGGTCCTACCTCGTGGGGCCACTGCTACTCTTGCTCCTGAG
AACTCCAGTGCCTCCTCTGAGCCTAGC
//
NIVO01016939.1:subseq(853875,54367)	GeneWise	match	51319	49973	967.07	-	.	NIVO01016939.1:subseq(853875,54367)-genewise-prediction-1
NIVO01016939.1:subseq(853875,54367)	GeneWise	cds	51319	49973	0.00	-	0	NIVO01016939.1:subseq(853875,54367)-genewise-prediction-1
//