Command line: [exonerate -m p2g --showtargetgff -q ../SPS2-human.fa -t SPS2-NIVO01016939.1.subseq]
Hostname: [sitdoc]

C4 Alignment:
------------
         Query: SPP00000033_1.0 # Protein # Selenophosphate synthetase 2 (SPS2) # Homo sapiens # Complete
        Target: NIVO01016939.1:subseq(853875,54367) Ammotragus lervia isolate NAZ scaffold1305_len909451_cov72, whole genome shotgun sequence:[revcomp]
         Model: protein2genome:local
     Raw score: 2079
   Query range: 0 -> 447
  Target range: 51319 -> 49972

     1 : MetAlaGluAlaSerAlaThrGlyAlaCysGlyGluAlaMet<-><-><->AlaAlaAla :    17
         |||||||||!.!:!!|||||||||||| !!||||||||||||         ||||||!.!
         MetAlaGluValAlaAlaThrGlyAlaGlyGlyGluAlaMetAlaAlaValAlaAlaGly
 51319 : ATGGCGGAAGTCGCGGCGACTGGCGCCGGCGGAGAGGCTATGGCGGCAGTGGCGGCGGGG : 51262

    18 : GluGlySerSerGlyProAlaGlyLeuThrLeuGlyArgSerPheSerAsnTyrArgPro :    37
         ||||||||||||||||||!.!|||||| !!|||||||||.!!||||||!:!|||||||||
         GluGlySerSerGlyProValGlyLeuProLeuGlyArgGlyPheSerSerTyrArgPro
 51261 : GAAGGCTCCTCGGGCCCGGTGGGCTTGCCTCTAGGCCGGGGCTTCTCGAGCTACCGGCCC : 51202

    38 : PheGluProGlnAlaLeuGlyLeuSerProSerTrpArgLeuThrGlyPheSerGlyMet :    57
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         PheGluProGlnAlaLeuGlyLeuSerProSerTrpArgLeuThrGlyPheSerGlyMet
 51201 : TTCGAGCCCCAGGCGTTGGGTCTCAGCCCGAGCTGGCGGCTCACCGGCTTCTCTGGCATG : 51142

    58 : LysGlyUnkGlyCysLysValProGlnGluAlaLeuLeuLysLeuLeuAlaGlyLeuThr :    77
         ||||||   |||||||||||||||||||||.!!|||||||||||||||||||||||||||
         LysGly***GlyCysLysValProGlnGluThrLeuLeuLysLeuLeuAlaGlyLeuThr
 51141 : AAGGGCTGAGGCTGCAAGGTCCCCCAGGAGACGCTGCTCAAACTCCTGGCGGGACTGACG : 51082

    78 : ArgProAspValArgProProLeuGlyArgGlyLeuValGlyGlyGlnGluGluAlaSer :    97
         ||||||!!:|||! !||| !!! !|||||||||||||||||||||!  ||||||.!!:!!
         ArgProGluValLeuProAlaProGlyArgGlyLeuValGlyGlyLeuGluGluThrAla
 51081 : CGACCGGAGGTGCTGCCCGCGCCGGGCCGGGGCCTGGTCGGAGGCCTTGAAGAGACGGCC : 51022

    98 : GlnGluAlaGlyLeuProAlaGlyAlaGlyProSerProThrPheProAlaLeuGlyIle :   117
         ||||||||||||||||||!.! !!|||! !|||||||||   ||||||:::|||||||||
         GlnGluAlaGlyLeuProValArgAlaGluProSerProProPheProSerLeuGlyIle
 51021 : CAGGAAGCCGGTCTGCCGGTGAGGGCGGAACCCAGcccccccttccccagcctgggCATT : 50962

   118 : GlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThr :   137
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyMetAspSerCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThr
 50961 : GGGATGGACTCCTGCGTCATACCCCTGAGACACGGGGGCCTGTCCTTGGTGCAGACCACC : 50902

   138 : AspPhePheTyrProLeuValGluAspProTyrMetMetGlyArgIleAlaCysAlaAsn :   157
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AspPhePheTyrProLeuValGluAspProTyrMetMetGlyArgIleAlaCysAlaAsn
 50901 : GACTTCTTTTACCCCCTGGTGGAAGATCCCTATATGATGGGGCGCATCGCATGTGCCAAC : 50842

   158 : ValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAspAsnMetLeuMetLeuLeu :   177
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ValLeuSerAspLeuTyrAlaMetGlyIleThrGluCysAspAsnMetLeuMetLeuLeu
 50841 : GTGCTGAGTGACCTCTACGCGATGGGCATTACTGAGTGTGATAACATGTTGATGCTACTC : 50782

   178 : SerValSerGlnSerMetSerGluGluGluArgGluLysValThrProLeuMetValLys :   197
         |||||||||||||||||| !!||||||||||||||||||:!!||||||||||||:!!|||
         SerValSerGlnSerMetProGluGluGluArgGluLysIleThrProLeuMetIleLys
 50781 : AGCGTCAGCCAGAGTATGCCTGAGGAGGAGCGAGAAAAGATAACACCACTCATGATCAAA : 50722

   198 : GlyPheArgAspAlaAlaGluGluGlyGlyThrAlaValThrGlyGlyGlnThrValVal :   217
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyPheArgAspAlaAlaGluGluGlyGlyThrAlaValThrGlyGlyGlnThrValVal
 50721 : GGCTTTCGGGATGCTGCCGAGGAAGGAGGGACTGCAGTGACTGGTGGGCAAACGGTGGTA : 50662

   218 : AsnProTrpIleIleIleGlyGlyValAlaThrValValCysGlnProAsnGluPheIle :   237
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         AsnProTrpIleIleIleGlyGlyValAlaThrValValCysGlnProAsnGluPheIle
 50661 : AACCCTTGGATTATCATCGGTGGAGTTGCCACTGTAGTATGTCAACCAAATGAATTCATC : 50602

   238 : MetProAspSerAlaValValGlyAspValLeuValLeuThrLysProLeuGlyThrGln :   257
         :!!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuProAspSerAlaValValGlyAspValLeuValLeuThrLysProLeuGlyThrGln
 50601 : TTGCCTGACAGCGCCGTTGTTGGGGATGTGCTCGTGTTAACTAAACCCTTAGGAACCCAG : 50542

   258 : ValAlaValAsnAlaHisGlnTrpLeuAspAsnProGluArgTrpAsnLysValLysMet :   277
         |||||||||||||||||||||||||||||||||||||||||||||||||||:!!||||||
         ValAlaValAsnAlaHisGlnTrpLeuAspAsnProGluArgTrpAsnLysIleLysMet
 50541 : GTAGCTGTCAATGCCCACCAATGGCTGGATAATCCTGAACGATGGAATAAGATAAAGATG : 50482

   278 : ValValSerArgGluGluValGluLeuAlaTyrGlnGluAlaMetPheAsnMetAlaThr :   297
         |||||||||||||||||||||||||||!.!||||||||||||||||||||||||||||||
         ValValSerArgGluGluValGluLeuGlyTyrGlnGluAlaMetPheAsnMetAlaThr
 50481 : GTGGTCTCCAGAGAAGAGGTAGAGCTGGGTTATCAGGAAGCCATGTTCAACATGGCTACC : 50422

   298 : LeuAsnArgThrAlaAlaGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIle :   317
         |||||||||! !||||||||||||||||||||||||||||||||||||||||||||||||
         LeuAsnArgIleAlaAlaGlyLeuMetHisThrPheAsnAlaHisAlaAlaThrAspIle
 50421 : CTCAATAGAATTGCTGCCGGGCTGATGCACACGTTTAATGCCCATGCAGCCACAGATATC : 50362

   318 : ThrGlyPheGlyIleLeuGlyHisSerGlnAsnLeuAlaLysGlnGlnArgAsnGluVal :   337
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         ThrGlyPheGlyIleLeuGlyHisSerGlnAsnLeuAlaLysGlnGlnArgAsnGluVal
 50361 : ACCGGCTTTGGCATTCTGGGTCACTCTCAGAACCTTgcaaaacaacaaagaaatgagGTC : 50302

   338 : SerPheValIleHisAsnLeuProIleIleAlaLysMetAlaAlaValSerLysAlaSer :   357
         |||||||||||||||||||||||||||||||||||||||||||||:!!||||||||||||
         SerPheValIleHisAsnLeuProIleIleAlaLysMetAlaAlaIleSerLysAlaSer
 50301 : TCGTTTGTCATTCATAATCTGCCCATCATTGCCAAGATGGCTGCCATCAGCAAGGCCAGC : 50242

   358 : GlyArgPheGlyLeuLeuGlnGlyThrSerAlaGluThrSerGlyGlyLeuLeuIleCys :   377
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyArgPheGlyLeuLeuGlnGlyThrSerAlaGluThrSerGlyGlyLeuLeuIleCys
 50241 : GGGCGCTTTGGTCTCCTGCAAGGAACCTCAGCAGAAACTTCTGGGGGGCTACTGATTTGT : 50182

   378 : LeuProArgGluGlnAlaAlaArgPheCysSerGluIleLysSerSerLysTyrGlyGlu :   397
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         LeuProArgGluGlnAlaAlaArgPheCysSerGluIleLysSerSerLysTyrGlyGlu
 50181 : CTGCCAAGAGAACAAGCAGCTCGCTTTTGTTCAGAAATCAAATCTTCAAAGTATGGAGAG : 50122

   398 : GlyHisGlnAlaTrpIleValGlyIleValGluLysGlyAsnArgThrAlaArgIleIle :   417
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
         GlyHisGlnAlaTrpIleValGlyIleValGluLysGlyAsnArgThrAlaArgIleIle
 50121 : GGTCATCAAGCCTGGATCGTCGGTATTGTGGAAAAAGGAAACCGGACAGCCCGGATCATT : 50062

   418 : AspLysProArgValIleGluValLeuProArgGlyAlaThrAlaAlaValLeuAlaPro :   437
         ||||||||||||||||||||||||||||||||||||||||||   |||..!|||||||||
         AspLysProArgValIleGluValLeuProArgGlyAlaThr---AlaThrLeuAlaPro
 50061 : GACAAGCCTCGCGTTATTGAGGTCCTACCTCGTGGGGCCACT---GCTACTCTTGCTCCT : 50005

   438 : AspSerSerAsnAlaSerSerGluProSer :   447
         !!:!:!|||!:!||||||||||||||||||
         GluAsnSerSerAlaSerSerGluProSer
 50004 : GAGAACTCCAGTGCCTCCTCTGAGCCTAGC : 49973

vulgar: SPP00000033_1.0 0 447 . NIVO01016939.1:subseq(853875,54367) 51319 49972 - 2079 M 14 42 G 0 9 M 417 1251 G 1 0 M 15 45
# --- START OF GFF DUMP ---
#
#
##gff-version 2
##source-version exonerate:protein2genome:local 2.2.0
##date 2017-11-21
##type DNA
#
#
# seqname source feature start end score strand frame attributes
#
NIVO01016939.1:subseq(853875,54367)	exonerate:protein2genome:local	gene	49973	51319	2079	-	.	gene_id 1 ; sequence SPP00000033_1.0 ; gene_orientation .
NIVO01016939.1:subseq(853875,54367)	exonerate:protein2genome:local	cds	49973	51319	.	-	.	
NIVO01016939.1:subseq(853875,54367)	exonerate:protein2genome:local	exon	49973	51319	.	-	.	insertions 9 ; deletions 1
NIVO01016939.1:subseq(853875,54367)	exonerate:protein2genome:local	similarity	49973	51319	2079	-	.	alignment_id 1 ; Query SPP00000033_1.0 ; Align 51320 1 42 ; Align 51269 15 1251 ; Align 50018 433 45
# --- END OF GFF DUMP ---
#
-- completed exonerate analysis