genewise output Score 18.01 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000032_1.0 178 TVCQPNEFIMPDNAVPG T+C P + P ++VPG TLCDPMDCSPPGSSVPG NIVO01060204.1:34140 actgcagtaccgttgcg ctgactaggccgcctcg tccccgcccaacccctg // >NIVO01060204.1:subseq(692,122317).pep TLCDPMDCSPPGSSVPG // >NIVO01060204.1:subseq(692,122317).[34140:34190].sp ACTCTCTGCGACCCCATGGACTGCAGCCCACCAGGCTCCTCCGTCCCTGGG // NIVO01060204.1:subseq(692,122317) GeneWise match 34140 34190 18.01 + . NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise cds 34140 34190 0.00 + 0 NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 // genewise output Score 840.82 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000032_1.0 1 MSTRESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH MS RESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH MSARESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENH NIVO01060204.1-72317 atgcgttacgatgtgaatctaatagcagagtagccggccatcgttcgac tccgactacagaataagtgtcgtcatagcggatcaattaattactaaaa gtaggctcgattagcgtcgacactaggctccagcatcggagggcaggcc SPP00000032_1.0 50 FQEDEQFLGAVMPRL IGMDTCVI FQEDEQFLGAVMPRL IGMDTCVI FQEDEQFLGAVMPRL G:G[ggc] IGMDTCVI NIVO01060204.1-72170 tcgggctcgggacacGGTATGTG Intron 1 CAGGCagagatga taaaaattgcttcgt <1-----[72124:66725]-1> tgtacgtt caatggttaatgaat cggcctct SPP00000032_1.0 74 PLRHGGLSLVQTTDYIYPIVDDPYMM PLRHGGLSLVQTTDYIYPIVDDPYMM PLRHGGLSLVQTTDYIYPIVDDPYMM NIVO01060204.1-66698 ccacggcttgcaagtatcagggctaaGTGAGTT Intron 2 CAG ctgaggtcttaccaatacttaacatt<0-----[66620:64687]-0> tggccctcgtacatcttccttctcgg SPP00000032_1.0 100 GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR GRIACANVLSDLYAMGVTECDNMLMLLGVSNKMTDR NIVO01060204.1-64686 gaagtgagcagctgaggagtgaacaccggaaaaaga ggtcgcattgatactgtcagaatttttgtgaatcag cgactcccctccccggcggtccgggccacttagccg SPP00000032_1.0 136 ERDKVMPLIIQGFKDAAEEAGTSVTG ERDKVMPLIIQGFKDAAEEAGTSVTG ERDKVMPLIIQGFKDAAEEAGTSVTG NIVO01060204.1-64578 GTGAGTA Intron 3 TAGgagagaccaacgtagggggggatgag <0-----[64578:63947]-0>agaattctttagtaaccaacgcctcg agcaggcatagttataaggaagtagc SPP00000032_1.0 162 GQTVLNPWIVLGGVATTVCQPNEFI GQTVLNPWIVLGGVATTVCQPNEFI GQTVLNPWIVLGGVATTVCQPNEFI M:M[atg] NIVO01060204.1-63868 gcagcactagtggggaagtccagtaATGTAAGTC Intron 4 gacttacgtttggtccctgacaatt <2-----[63791:62000] cgagaccgttaatgtgtccgccgtc SPP00000032_1.0 187 PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI PDNAVPGDVLVLTKPLGTQVAVAVHQWLDI NIVO01060204.1-62002 CAGGcgaggcgggcgcaactgacgggggcctcga -2> caactcgattttcactgcatctctaagtat attaggtcgtcgaatgggagtgtgcgggtt SPP00000032_1.0 218 PEKWNKIKLVVTQEDVELAYQEAMMN PEKWNKIKLVVTQEDVELAYQEAMMN PEKWNKIKLVVTQEDVELAYQEAMMN NIVO01060204.1-61908 GTAAGTG Intron 5 CAGcgataaaacggacggggcgtcggaaa <0-----[61908:60032]-0>caagaatatttcaaatatcaaactta tgggtacgagccggtggggcgggggc SPP00000032_1.0 244 MARLNRT AGLMHTFNAHAATDIT MARLNRT AGLMHTFNAHAATDIT MARLNRT A:A[gcg] AGLMHTFNAHAATDIT NIVO01060204.1-59953 agacaaaGGTACGGC Intron 6 CAGCGggcacatagcggagaa tcgtagc <1-----[59931:51917]-1> cgttactacacccatc gtgccga aacgcgccctgttccg SPP00000032_1.0 268 GFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT GFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT GFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMAAVSKACGNMFGLMHGT NIVO01060204.1-51866 gtgacgcgcacgaccaaggttgacaccgcgaagggaagtgaatgcacga gtgttgacaatcaaagaatctttaatcttcatcctgacggattgttagc ccgtgccagcgcagggtgactgtcctccgcggatgcgccacgtgcgcgc SPP00000032_1.0 317 CPETS GLLICLPREQAARFCAEI CPETS GLLICLPREQAARFCAEI CPETS G:G[ggc] GLLICLPREQAARFCAEI NIVO01060204.1-51719 tcgatGGTACCAG Intron 7 CAGGCgccatcccgcggcttgga gcacc <1-----[51703:50212]-1> gtttgtcgaaccgtgcat cagaa ccgctaatgaataccagc SPP00000032_1.0 341 KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPG KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPG KSPKYGEGHQAWIIGIVEKGNRTARIIDKPRIIEVAPQVATQNVNPTPG NIVO01060204.1-50155 atcatgggccgtaagaggagacagaaagaccaagggccggacagacacg accaagagaacgttgttaagagccgttaacgttatccatccaatacccg gccgttaccaagttgcgggtccacgcacgcgctgcaaggccgtgccatt SPP00000032_1.0 390 ATS ATS ATS NIVO01060204.1-50008 gat ccc ccg // Making a G in phase 1 intron Making a M in phase 2 intron Making a A in phase 1 intron Making a G in phase 1 intron >NIVO01060204.1:subseq(692,122317).pep MSARESFNPESYELDKSFRLTRFTELKGTGCKVPQDVLQKLLESLQENHFQEDEQFLGAV MPRLGIGMDTCVIPLRHGGLSLVQTTDYIYPIVDDPYMMGRIACANVLSDLYAMGVTECD NMLMLLGVSNKMTDRERDKVMPLIIQGFKDAAEEAGTSVTGGQTVLNPWIVLGGVATTVC QPNEFIMPDNAVPGDVLVLTKPLGTQVAVAVHQWLDIPEKWNKIKLVVTQEDVELAYQEA MMNMARLNRTAAGLMHTFNAHAATDITGFGILGHAQNLAKQQRNEVSFVIHNLPVLAKMA AVSKACGNMFGLMHGTCPETSGGLLICLPREQAARFCAEIKSPKYGEGHQAWIIGIVEKG NRTARIIDKPRIIEVAPQVATQNVNPTPGATS // >NIVO01060204.1:subseq(692,122317).[72317:49998].sp ATGTCTGCACGGGAGTCCTTTAACCCGGAAAGTTATGAATTGGACAAGAGTTTCCGGTTA ACCAGATTCACTGAACTGAAGGGCACTGGCTGCAAAGTGCCCCAAGATGTCCTGCAGAAA TTGCTGGAGTCCTTACAGGAGAACCACTTCCAAGAAGATGAGCAGTTTCTTGGAGCAGTT ATGCCAAGACTTGGCATCGGGATGGACACCTGTGTCATTCCTCTGAGGCACGGCGGCCTT TCCTTGGTTCAAACCACAGATTACATTTATCCCATCGTTGATGACCCTTACATGATGGGC AGGATAGCCTGTGCCAACGTCCTCAGTGACCTCTACGCCATGGGGGTCACGGAGTGTGAC AACATGCTGATGCTCCTCGGAGTCAGTAATAAAATGACCGACAGGGAAAGGGACAAAGTG ATGCCCCTAATTATACAGGGTTTTAAAGATGCAGCAGAGGAGGCAGGAACGTCTGTAACG GGCGGCCAGACAGTGCTAAACCCCTGGATTGTTTTAGGAGGTGTGGCTACGACTGTCTGC CAGCCCAACGAGTTTATCATGCCAGATAATGCAGTGCCGGGTGACGTGCTTGTCCTGACA AAACCTTTGGGGACGCAAGTGGCTGTGGCTGTGCACCAGTGGCTGGATATTCCTGAGAAG TGGAATAAAATCAAGCTAGTGGTCACCCAGGAGGATGTGGAGCTGGCGTACCAGGAGGCG ATGATGAACATGGCTAGGCTCAACAGGACAGCGGCAGGACTCATGCACACGTTCAACGCC CATGCGGCTACTGACATCACGGGCTTCGGGATTCTGGGCCACGCACAGAACCTGGCCAAA CAGCAGAGGAATGAGGTATCCTTTGTGATTCACAACCTTCCCGTCCTGGCCAAGATGGCA GCTGTGAGCAAGGCCTGCGGAAACATGTTTGGGCTCATGCACGGGACCTGCCCAGAGACA TCAGGCGGCCTCCTGATCTGTCTACCACGTGAGCAAGCAGCTCGATTCTGCGCAGAGATC AAGTCCCCCAAGTATGGTGAAGGCCACCAAGCATGGATTATTGGGATCGTGGAGAAGGGT AACCGCACAGCCAGGATCATAGACAAGCCCCGGATCATTGAGGTCGCACCACAGGTGGCC ACCCAGAATGTGAACCCCACACCTGGTGCCACCTCG // NIVO01060204.1:subseq(692,122317) GeneWise match 72317 50000 840.82 - . NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise cds 72317 72125 0.00 - 0 NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise intron 72124 66725 0.00 - . NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise cds 66724 66621 0.00 - 2 NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise intron 66620 64687 0.00 - . NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise cds 64686 64579 0.00 - 0 NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise intron 64578 63947 0.00 - . NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise cds 63946 63792 0.00 - 0 NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise intron 63791 62000 0.00 - . NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise cds 61999 61909 0.00 - 1 NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise intron 61908 60032 0.00 - . NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise cds 60031 59932 0.00 - 0 NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise intron 59931 51917 0.00 - . NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise cds 51916 51704 0.00 - 2 NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise intron 51703 50212 0.00 - . NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 NIVO01060204.1:subseq(692,122317) GeneWise cds 50211 50000 0.00 - 2 NIVO01060204.1:subseq(692,122317)-genewise-prediction-1 //