Command line: [exonerate -m p2g --showtargetgff -q ../SPS1-human.fa -t SPS1-NIVO01060204.1.subseq] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000032_1.0 # Protein # Selenophosphate synthetase 1 (SPS1) # Homo sapiens # Complete Target: NIVO01060204.1:subseq(692,122317) Ammotragus lervia isolate NAZ scaffold3406_len364328_cov71, whole genome shotgun sequence:[revcomp] Model: protein2genome:local Raw score: 1997 Query range: 0 -> 392 Target range: 72317 -> 49999 1 : MetSerThrArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgLeu : 20 ||||||.!!||||||||||||||||||||||||||||||||||||||||||||||||||| MetSerAlaArgGluSerPheAsnProGluSerTyrGluLeuAspLysSerPheArgLeu 72317 : ATGTCTGCACGGGAGTCCTTTAACCCGGAAAGTTATGAATTGGACAAGAGTTTCCGGTTA : 72260 21 : ThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGlnLys : 40 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ThrArgPheThrGluLeuLysGlyThrGlyCysLysValProGlnAspValLeuGlnLys 72259 : ACCAGATTCACTGAACTGAAGGGCACTGGCTGCAAAGTGCCCCAAGATGTCCTGCAGAAA : 72200 41 : LeuLeuGluSerLeuGlnGluAsnHisPheGlnGluAspGluGlnPheLeuGlyAlaVal : 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuLeuGluSerLeuGlnGluAsnHisPheGlnGluAspGluGlnPheLeuGlyAlaVal 72199 : TTGCTGGAGTCCTTACAGGAGAACCACTTCCAAGAAGATGAGCAGTTTCTTGGAGCAGTT : 72140 61 : MetProArgLeu{G} >>>> Target Intron 1 >>>> {ly}IleGlyMetAsp : 69 ||||||||||||{|} 5400 bp {||}|||||||||||| MetProArgLeu{G}++ ++{ly}IleGlyMetAsp 72139 : ATGCCAAGACTT{G}gt.........................ag{GC}ATCGGGATGGAC : 66713 70 : ThrCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspTyrIle : 89 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ThrCysValIleProLeuArgHisGlyGlyLeuSerLeuValGlnThrThrAspTyrIle 66712 : ACCTGTGTCATTCCTCTGAGGCACGGCGGCCTTTCCTTGGTTCAAACCACAGATTACATT : 66653 90 : TyrProIleValAspAspProTyrMetMet >>>> Target Intron 2 >>>> G : 100 |||||||||||||||||||||||||||||| 1934 bp | TyrProIleValAspAspProTyrMetMet++ ++G 66652 : TATCCCATCGTTGATGACCCTTACATGATGgt.........................agG : 64686 101 : lyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysA : 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| lyArgIleAlaCysAlaAsnValLeuSerAspLeuTyrAlaMetGlyValThrGluCysA 64685 : GCAGGATAGCCTGTGCCAACGTCCTCAGTGACCTCTACGCCATGGGGGTCACGGAGTGTG : 64626 121 : spAsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrAspArg >>>> Target : 136 ||||||||||||||||||||||||||||||||||||||||||||||| 6 spAsnMetLeuMetLeuLeuGlyValSerAsnLysMetThrAspArg++ 64625 : ACAACATGCTGATGCTCCTCGGAGTCAGTAATAAAATGACCGACAGGgt........... : 64576 137 : Intron 3 >>>> GluArgAspLysValMetProLeuIleIleGlnGlyPheLysAs : 150 32 bp |||||||||||||||||||||||||||||||||||||||||||| ++GluArgAspLysValMetProLeuIleIleGlnGlyPheLysAs 64575 : ..............agGAAAGGGACAAAGTGATGCCCCTAATTATACAGGGTTTTAAAGA : 63904 151 : pAlaAlaGluGluAlaGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIl : 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| pAlaAlaGluGluAlaGlyThrSerValThrGlyGlyGlnThrValLeuAsnProTrpIl 63903 : TGCAGCAGAGGAGGCAGGAACGTCTGTAACGGGCGGCCAGACAGTGCTAAACCCCTGGAT : 63844 171 : eValLeuGlyGlyValAlaThrThrValCysGlnProAsnGluPheIle{Me} >>>> : 187 |||||||||||||||||||||||||||||||||||||||||||||||||{||} eValLeuGlyGlyValAlaThrThrValCysGlnProAsnGluPheIle{Me}++ 63843 : TGTTTTAGGAGGTGTGGCTACGACTGTCTGCCAGCCCAACGAGTTTATC{AT}gt..... : 63789 188 : Target Intron 4 >>>> {t}ProAspAsnAlaValProGlyAspValLeuValLe : 199 1792 bp {|}||||||||||||||||||||||||||||||||||| ++{t}ProAspAsnAlaValProGlyAspValLeuValLe 63788 : ....................ag{G}CCAGATAATGCAGTGCCGGGTGACGTGCTTGTCCT : 61965 200 : uThrLysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIle >>> : 218 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| uThrLysProLeuGlyThrGlnValAlaValAlaValHisGlnTrpLeuAspIle++ 61964 : GACAAAACCTTTGGGGACGCAAGTGGCTGTGGCTGTGCACCAGTGGCTGGATATTgt... : 61906 219 : > Target Intron 5 >>>> ProGluLysTrpAsnLysIleLysLeuValValThr : 229 1877 bp |||||||||||||||||||||||||||||||||||| ++ProGluLysTrpAsnLysIleLysLeuValValThr 61905 : ......................agCCTGAGAAGTGGAATAAAATCAAGCTAGTGGTCACC : 59998 230 : GlnGluAspValGluLeuAlaTyrGlnGluAlaMetMetAsnMetAlaArgLeuAsnArg : 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlnGluAspValGluLeuAlaTyrGlnGluAlaMetMetAsnMetAlaArgLeuAsnArg 59997 : CAGGAGGATGTGGAGCTGGCGTACCAGGAGGCGATGATGAACATGGCTAGGCTCAACAGG : 59938 250 : Thr{A} >>>> Target Intron 6 >>>> {la}AlaGlyLeuMetHisThrPhe : 258 |||{|} 8015 bp {||}||||||||||||||||||||| Thr{A}++ ++{la}AlaGlyLeuMetHisThrPhe 59937 : ACA{G}gt.........................ag{CG}GCAGGACTCATGCACACGTTC : 51896 259 : AsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisAlaGlnAsnLeu : 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AsnAlaHisAlaAlaThrAspIleThrGlyPheGlyIleLeuGlyHisAlaGlnAsnLeu 51895 : AACGCCCATGCGGCTACTGACATCACGGGCTTCGGGATTCTGGGCCACGCACAGAACCTG : 51836 279 : AlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuProValLeuAlaLys : 298 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AlaLysGlnGlnArgAsnGluValSerPheValIleHisAsnLeuProValLeuAlaLys 51835 : GCCAAACAGCAGAGGAATGAGGTATCCTTTGTGATTCACAACCTTCCCGTCCTGGCCAAG : 51776 299 : MetAlaAlaValSerLysAlaCysGlyAsnMetPheGlyLeuMetHisGlyThrCysPro : 318 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| MetAlaAlaValSerLysAlaCysGlyAsnMetPheGlyLeuMetHisGlyThrCysPro 51775 : ATGGCAGCTGTGAGCAAGGCCTGCGGAAACATGTTTGGGCTCATGCACGGGACCTGCCCA : 51716 319 : GluThrSer{G} >>>> Target Intron 7 >>>> {ly}GlyLeuLeuIleCys : 327 |||||||||{|} 1492 bp {||}||||||||||||||| GluThrSer{G}++ ++{ly}GlyLeuLeuIleCys 51715 : GAGACATCA{G}gt.........................ag{GC}GGCCTCCTGATCTGT : 50197 328 : LeuProArgGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGlyGlu : 347 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| LeuProArgGluGlnAlaAlaArgPheCysAlaGluIleLysSerProLysTyrGlyGlu 50196 : CTACCACGTGAGCAAGCAGCTCGATTCTGCGCAGAGATCAAGTCCCCCAAGTATGGTGAA : 50137 348 : GlyHisGlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIle : 367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| GlyHisGlnAlaTrpIleIleGlyIleValGluLysGlyAsnArgThrAlaArgIleIle 50136 : GGCCACCAAGCATGGATTATTGGGATCGTGGAGAAGGGTAACCGCACAGCCAGGATCATA : 50077 368 : AspLysProArgIleIleGluValAlaProGlnValAlaThrGlnAsnValAsnProThr : 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| AspLysProArgIleIleGluValAlaProGlnValAlaThrGlnAsnValAsnProThr 50076 : GACAAGCCCCGGATCATTGAGGTCGCACCACAGGTGGCCACCCAGAATGTGAACCCCACA : 50017 388 : ProGlyAlaThrSer : 392 ||||||||||||||| ProGlyAlaThrSer 50016 : CCTGGTGCCACCTCG : 50000 vulgar: SPP00000032_1.0 0 392 . NIVO01060204.1:subseq(692,122317) 72317 49999 - 1997 M 64 192 S 0 1 5 0 2 I 0 5396 3 0 2 S 1 2 M 34 102 5 0 2 I 0 1930 3 0 2 M 36 108 5 0 2 I 0 628 3 0 2 M 51 153 S 0 2 5 0 2 I 0 1788 3 0 2 S 1 1 M 30 90 5 0 2 I 0 1873 3 0 2 M 33 99 S 0 1 5 0 2 I 0 8011 3 0 2 S 1 2 M 70 210 S 0 1 5 0 2 I 0 1488 3 0 2 S 1 2 M 70 210 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-21 ##type DNA # # # seqname source feature start end score strand frame attributes # NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local gene 50000 72317 1997 - . gene_id 1 ; sequence SPP00000032_1.0 ; gene_orientation + NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local cds 72125 72317 . - . NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local exon 72125 72317 . - . insertions 0 ; deletions 0 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice5 72123 72124 . - . intron_id 1 ; splice_site "GT" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local intron 66725 72124 . - . intron_id 1 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice3 66725 66726 . - . intron_id 0 ; splice_site "AG" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local cds 66621 66724 . - . NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local exon 66621 66724 . - . insertions 0 ; deletions 0 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice5 66619 66620 . - . intron_id 2 ; splice_site "GT" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local intron 64687 66620 . - . intron_id 2 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice3 64687 64688 . - . intron_id 1 ; splice_site "AG" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local cds 64579 64686 . - . NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local exon 64579 64686 . - . insertions 0 ; deletions 0 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice5 64577 64578 . - . intron_id 3 ; splice_site "GT" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local intron 63947 64578 . - . intron_id 3 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice3 63947 63948 . - . intron_id 2 ; splice_site "AG" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local cds 63792 63946 . - . NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local exon 63792 63946 . - . insertions 0 ; deletions 0 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice5 63790 63791 . - . intron_id 4 ; splice_site "GT" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local intron 62000 63791 . - . intron_id 4 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice3 62000 62001 . - . intron_id 3 ; splice_site "AG" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local cds 61909 61999 . - . NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local exon 61909 61999 . - . insertions 0 ; deletions 0 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice5 61907 61908 . - . intron_id 5 ; splice_site "GT" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local intron 60032 61908 . - . intron_id 5 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice3 60032 60033 . - . intron_id 4 ; splice_site "AG" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local cds 59932 60031 . - . NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local exon 59932 60031 . - . insertions 0 ; deletions 0 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice5 59930 59931 . - . intron_id 6 ; splice_site "GT" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local intron 51917 59931 . - . intron_id 6 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice3 51917 51918 . - . intron_id 5 ; splice_site "AG" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local cds 51704 51916 . - . NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local exon 51704 51916 . - . insertions 0 ; deletions 0 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice5 51702 51703 . - . intron_id 7 ; splice_site "GT" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local intron 50212 51703 . - . intron_id 7 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local splice3 50212 50213 . - . intron_id 6 ; splice_site "AG" NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local cds 50000 50211 . - . NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local exon 50000 50211 . - . insertions 0 ; deletions 0 NIVO01060204.1:subseq(692,122317) exonerate:protein2genome:local similarity 50000 72317 1997 - . alignment_id 1 ; Query SPP00000032_1.0 ; Align 72318 1 192 ; Align 66723 66 102 ; Align 64687 100 108 ; Align 63947 136 153 ; Align 61999 188 90 ; Align 60032 218 99 ; Align 51915 252 210 ; Align 50210 323 210 # --- END OF GFF DUMP --- # -- completed exonerate analysis