Command line: [exonerate -m p2g --showtargetgff -q ../SBP2-human.fa -t SBP2-NIVO01049792.1.subseq] Hostname: [sitdoc] C4 Alignment: ------------ Query: SPP00000037_1.0 # Protein # SECIS binding protein 2 (SBP2) # Homo sapiens # Complete Target: NIVO01049792.1:subseq(1550389,135394) Ammotragus lervia isolate NAZ scaffold1588_len2316217_cov71, whole genome shotgun sequence Model: protein2genome:local Raw score: 2907 Query range: 11 -> 854 Target range: 50011 -> 85394 12 : GluGlyIleLysLeuSerAlaAspValLysProPheValProArgPheAlaGlyLeuAsn : 31 :!!.!!||||||||||||||||||||||||||||||||||||!:!||||||||||||||| GlnSerIleLysLeuSerAlaAspValLysProPheValProLysPheAlaGlyLeuAsn 50012 : CAGAGCATCAAGTTGTCAGCAGATGTCAAACCATTTGTCCCCAAATTTGCTGGGCTCAAT : 50069 32 : ValAlaTrpLeuGluSerSerGluAlaCysValPheProSerSerAlaAlaThr<->Tyr : 50 |||!.!|||! !||||||||||||||| ! ||||||||||||!!!||||||||| ||| ValGlyTrpSerGluSerSerGluAlaArgValPheProSerCysAlaAlaThrSerTyr 50070 : GTGGGATGGTCAGAGTCTTCAGAAGCACGGGTTTTCCCCAGCTGTGCAGCCACCTCGTAC : 50129 51 : TyrProPheValGlnGluProProValThr{Gl} >>>> Target Intron 1 >>> : 61 ||||||! !|||||||||! ! !!||| !!{||} 4722 bp TyrProCysValGlnGluLeuAlaValPro{Gl}++ 50130 : TATCCGTGTGTCCAAGAACTAGCAGTGCCT{GA}gt........................ : 50166 62 : > {u}GlnLysIleTyrThrGluAspMetAlaPheGlyAlaSerThrPheProProGln : 79 {|}||||||:!!||||||!!:|||||||||||||||||||||...|||||| !!||| ++{u}GlnLysLeuTyrThrAspAspMetAlaPheGlyAlaSerAlaPheProSerGln 50167 : .ag{A}CAGAAACTCTATACTGATGATATGgcttttggagcttcagcttttccATCTCAG : 54938 80 : TyrLeuSerSerGluIleThrLeuHisProTyrAlaTyrSerProTyrThrLeuAspSer : 99 |||!!!|||:!!|||||| !!|||||||||||||||||||||||||||||||||.!.||| TyrPheSerAlaGluIleProLeuHisProTyrAlaTyrSerProTyrThrLeuGlnSer 54939 : TATTTCTCTGCTGAGATCCCTCTTCATCCATATGCCTACTCTCCCTACACCCTGCAGTCA : 54998 100 : ThrGlnAsnValTyrSerValProGlySerGlnTyrLeuTyrAsnGlnProSerCysTyr : 119 !!|||||||||! ! !!||||||||||||! !||| ! !!|||||||||||||||!:! ProGlnAsnValCysProValProGlySerProTyrAspAspAsnGlnProSerCysPhe 54999 : CCACAAAATGTTTGCCCAGTGCCTGGCTCCCCATATGATGACAACCAACCCAGTTGTTTT : 55058 120 : ArgGlyPheGlnThrValLysHisArgAsnGluAsnThrCysProLeuProGlnGluMet : 139 !!|||||||||! !||||||! |||!:!|||:!!||||||||||||||||||!!:! GlyGlyPheGlnArgValLysProArgSerGluHisThrCysProLeuProGlnAspThr 55059 : GGAGGTTTTCAAAGAGTGAAGCCACGAAGTGAGCACACGTGCCCTCTCCCACAAGACACA : 55118 140 : LysAlaLeuPheLysLysLys{Th} >>>> Target Intron 2 >>>> {r}Tyr : 148 ||||||:!!|||||| {!.} 198 bp {!}::: LysAlaValPheLysValCys{As}-+ -+{n}Phe 55119 : AAAGCTGTGTTTAAGGTCTGT{AA}at.........................tg{t}ttc : 55343 149 : AspGluLysLysThrTyrAspGlnGlnLysPheAspSerGluArgAlaAspGlyThrIle : 168 ::!|||||||||||||||:!!|||||||||||||||:!!!:!.!!|||||| !!:!! LeuGlnLysLysThrTyrAspGluGlnLysPheAspSerLysLysThrAspGlyProVal 55344 : ctgcaGAAGAAAACCTATGATGAACAAAAGTTTGACAGTAAGAAGACTGATGGACCTGTA : 55403 169 : SerSerGluIleLysSerAlaArgGlySerHisHisLeuSerIleTyrAlaGluAsnSer : 188 ||||||!!::!!||||||!.!!:!||||||! !!.!:!!||||||:!!|||||||||||| SerSerAspLeuLysSerValLysGlySerProArgValSerIleHisAlaGluAsnSer 55404 : TCATCTGATTTAAAATCAGTCAAAGGTTCACCTCGTGTGTCCATTCATGCTGagaatagt : 55463 189 : LeuLysSer{A} >>>> Target Intron 3 >>>> {sp}GlyTyrHisLysArg : 197 |||||||||{|} 1198 bp {||}||||||:!!|||||| LeuLysSer{A}++ ++{sp}GlyTyrTyrLysArg 55464 : ttgaaatca{g}gt.........................ag{AT}GGTTATTATAAACGA : 56688 198 : ThrAspArgLysSerArgIleIleAlaLysAsnValSerThrSerLysProGluPheGlu : 217 ||||||||||||||||||||||||! !|||!:!! !|||.!!|||||||||||||||! ! ThrAspArgLysSerArgIleIleGluLysSerGlySerAlaSerLysProGluPheGly 56689 : ACAGACAGGAAATCCAGAATCATTGAAAAGAGTGGATCTGCCTCCAAACCTGAGTTTGGA : 56748 218 : PheThrThrLeuAspPheProGluLeuGlnGlyAlaGluAsnAsn<->MetSerGluIle : 236 ||||||! !|||||||||||||||||||||.!! !!||||||!:! !!: !!:!!||| PheThrArgLeuAspPheProGluLeuGlnSerProGluAsnSerGluIleProLysIle 56749 : TTTACCAGGTTGGATTTTCCTGAACTGCAGAGTCCAGAGAACAGTGAGATACCAAAGATA : 56808 237 : GlnLysGlnProLysTrpGlyProValHisSerValSerThrAspIleSerLeuLeuArg : 256 ||||||||||||||||||||||||:!!||||||..!|||||||||||||||||||||||| GlnLysGlnProLysTrpGlyProLeuHisSerThrSerThrAspIleSerLeuLeuArg 56809 : CAAAAGCAGCCCAAGTGGGGGCCTTTACACTCCACCTCTACTGACATTTCTCTTCTCAGA : 56868 257 : GluValValLysProAlaAlaValLeuSerLys >>>> Target Intron 4 >>>> : 268 |||:!!! !! !|||:!!|||! !||||||:!! 3090 bp GluMetGlyThrProSerAlaGlyLeuSerGlu++ 56869 : GAAATGGGGACACCCTCTGCAGGGTTATCAGAGgt......................... : 56906 269 : GlyGluIleValValLys<->AsnAsnProAsnGluSerValThrAlaAsnAlaAlaT : 286 |||||||||||||||||| ||||||! !!.!||||||||||||! !||||||!.!| ++GlyGluIleValValLysAsnAsnAsnArgThrGluSerValThrAspAsnAlaValT 56907 : agGGTGAAATAGTGGTGAAAAATAATAATCGGACTGAGTCTGTAACCGATAATGCTGTTA : 60051 287 : hrAsnSerProSerCysThrArg{G} >>>> Target Intron 5 >>>> {lu}L : 295 ||!:! !! !!||||||||||||{|} 1547 bp {||}| hrSerProSerSerCysThrArg{G}++ ++{lu}L 60052 : CCAGTCCCTCTTCATGTACAAGA{G}gt.........................ag{AA}T : 61625 296 : euSerTrpThrProMetGlyTyrValValArgGlnThrLeuSerThrGluLeuSerAlaA : 315 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| !!| euSerTrpThrProMetGlyTyrValValArgGlnThrLeuSerThrGluLeuSerProA 61626 : TATCTTGGACACCAATGGGTTATGTTGTTCGGCAGACATTATCTACAGAACTGTCACCTG : 61685 316 : laProLysAsnValThrSerMetIleAsnLeuLysThrIleAlaSerSerAlaAspProL : 335 |||||||||||||||||||||||||||||||||||! !:!!|||||| !!|||||||||| laProLysAsnValThrSerMetIleAsnLeuLysMetValAlaSerProAlaAspProL 61686 : CCCCTAAAAATGTTACTTCCATGATAAACCTAAAGATGGTTGCTTCACCAGCAGATCCTA : 61745 336 : ysAsnValSerIleProSerSerGluAlaLeuSerSerAspProSerTyrAsnLysGluL : 355 |||||!.!|||!!:||||||||||||!.!||||||! !!!:||| !!||| ||||||| ysAsnAlaSerMetProSerSerGluValLeuSerLeuGluProProTyr---LysGluL 61746 : AAAATGCTAGTATGCCATCTTCTGAAGTTTTATCTTTGGAGCCTCCCTAC---AAAGAGA : 61802 356 : ysHisIleIleHisProThrGlnLys >>>> Target Intron 6 >>>> SerLy : 365 |||||:!!:!!|||! !|||:!!||| 2656 bp ||||| ysHisValValHisLeuThrGluLys++ ++SerLy 61803 : AACACGTTGTCCATCTTACTGAAAAGgt.........................agTCCAA : 64488 366 : sAlaSerGlnGlySerAspLeuGluGlnAsnGluAlaSerArgLysAsnLysLysLysLy : 385 |||||||||||||.!!..!! !|||||||||||||||||||||||||||||||||||||| sAlaSerGlnGlyGlySerProGluGlnAsnGluAlaSerArgLysAsnLysLysLysLy 64489 : AGCATCACAAGGTGGCAGTCCTGAGCAAAATGAAGCctcaagaaagaataagaaaaagaa : 64548 386 : sGluLysSerThrSerLysTyrGluValLeuThrValGlnGluProProArgIleGlu : 405 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| sGluLysSerLysSerLysTyrGluValLeuThrValGlnGluProProArgIleGlu++ 64549 : agaaaaatctaaatcAAAATATGAAGTCCTGACAGTTCAAGAGCCACCAAGGATTGaagt : 64608 406 : >>>> Target Intron 7 >>>> AspAlaGluGluPheProAsnLeuAlaValAla : 415 1306 bp ||||||||||||||||||||||||||||||||| ++AspAlaGluGluPheProAsnLeuAlaValAla 64609 : .........................agGATGCCGAGGAATTTCCCAATCTGGCAGTTGCA : 65944 416 : SerGluArgArgAspArgIleGluThrProLysPheGlnSerLysGlnGlnProGln > : 435 ||||||||||||||||||:!!|||:!!|||||||||||||||||||||||||||||| SerGluArgArgAspArgValGluSerProLysPheGlnSerLysGlnGlnProGln++ 65945 : TCTGAAAGAAGAGACAGAGTAGAGTCACCGAAATTTCAGTCTAAACAGCAGCCACAGgt. : 66006 436 : >>> Target Intron 8 >>>> AspAsnPheLysAsnAsnValLysLysSerGlnL : 446 1276 bp :::|||||||||:::::: !||||||||||||: ++AsnAsnPheLysSerSerArgLysLysSerGlnI 66007 : ........................agaataattttaaaagtagtagAAAGAAAAGCCAGA : 67313 447 : euProValGlnLeuAspLeuGlyGlyMetLeuThrAlaLeuGluLysLysGlnHisSerG : 466 !!|||||||||||||||||||||||||||||||||||||||||||||||||||||||||! leProValGlnLeuAspLeuGlyGlyMetLeuThrAlaLeuGluLysLysGlnHisSerP 67314 : TTCCAGTACAGTTGGATTTGGGAGGAATGCTAACCGCACTGGAAAAGAAGCAGCACTCCC : 67373 467 : lnHisAlaLysGlnSerSerLysProValValValSer{V} >>>> Target Intro : 479 !:!!||||||||||||||||||||||||||| !!|||{|} 6848 bp roAsnAlaLysGlnSerSerLysProValValPheSer{V}++ 67374 : CGAATGCAAAGCAGTCCTCCAAACCAGTGGTGTTCTCA{G}gt................. : 67415 480 : n 9 >>>> {al}GlyAlaValProValLeuSerLysGluCysAlaSerGlyGluArgG : 495 {||}||||||||||||||||||||||||!!:! ! !||||||:!!!:!| ++{al}GlyAlaValProValLeuSerLysAspSerMetSerGlyLysLysG 67416 : ........ag{TT}GGGGCAGTGCCCGTCCTCTCCAAAGACTCCATGTCAGGGAAGAAGG : 74308 496 : lyArgArgMetSerGlnMetLysThrProHisAsnProLeuAspSerSerAlaProLeuM : 515 ||!.!|||:!::!!|||:!!|||||||||||||||||||||||||||!!!:!!|||:!!! lyHisArgLeuAlaGlnValLysThrProHisAsnProLeuAspSerThrSerProMetT 74309 : GCCACCGCCTTGCCCAGGTGAAGACCCCGCACAACCCGTTAGACTCCACCTCCCCCATGA : 74368 516 : etLysLysGlyLysGlnArgGluIleProLysAlaLysLysProThrSerLeuLysLys : 535 !|||||||||||||||||||||:!!||||||||||||||||||||| !!||||||||| hrLysLysGlyLysGlnArgGluValProLysAlaLysLysProThrProLeuLysLys+ 74369 : CGAAGAAGGGAAAGCAGAGGGAGGTCCCCAAGGCCAAGAAGCCAACCCCGTTGAAGAAGg : 74428 536 : >>>> Target Intron 10 >>>> IleIleLeuLysGluArgGlnGluArgLys< : 545 704 bp |||||||||||||||||||||||||||||| + ++IleIleLeuLysGluArgGlnGluArgLysG 74429 : t..........................agattattttgaaaGAACGGCAGGAGAGAAAGC : 75162 546 : ->GlnArgLeuGlnGluAsnAlaValSerProAlaPheThrSerAspAspThrGlnAsp< : 564 |||||||||||||||||||||:!!|||||||||||| !!|||||||||..!|||||| lnGlnArgLeuGlnGluAsnAlaLeuSerProAlaPheProSerAspAspValGlnAspV 75163 : AGCAGCGTCTCCAAGAAAATGCTCTGAGCCCAGCTTTTCCCAGTGACGACGTGCAGGATG : 75222 565 : -><->GlyGluSerGlyGlyAspAspGlnPheProGluGlnAlaGlu{Le} >>>> Ta : 578 ! !|||||||||||||||||||||.!!! !..!! ! !!!!:{:!} alArgAspGluSerGlyGlyAspAspGlnLeuLeuArgProProAsp{Va}++ 75223 : TGCGAGATGAGAGCGGCGGTGATGACCAGCTCCTCAGGCCGCCTGAC{GT}gt....... : 75274 579 : rget Intron 11 >>>> {u}SerGlyProGluGlyMetAspGluLeuIleSerThr : 590 939 bp {!}.!! ! !!! ! ! !... !! ! !! ! ++{l}GlyProAlaValThrSerPheSerGluThrProGly 75275 : ...................ag{G}GGCCCTGCTGTAACTTCTTTCTCTGAAACTCCAGGG : 76245 591 : ProSerValGluAspLysSerGluGluProProGlyThrGluLeuGlnArgAspThrGlu : 610 !! ! !|||..! !||| ! ||| !!.! !... !..!..!!!: ! ! GluMetLysGluSerValSerCysValProValAlaGluSerLysSerGluGluGlnPro 76246 : GAAATGAAAGAGTCTGTGTCCTGTGTTCCTGTGGCGGAGAGCAAGTCAGAGGAGCAGCCA : 76305 611 : AlaSerHisLeuAlaProAsnHisThrThrPheProLysIleHisSerArgArgPheArg : 630 !.!:!!.!.! ! ! !.!. !.!!! !||||||||||||||||||||||||||| GlyAlaGluProGlnLysGluThrGluAlaCysProLysIleHisSerArgArgPheArg 76306 : GGAGCTGAGCCCCAGAAGGAGACAGAGGCCTGCCCCAAGATCCACAGCCGGCGGTTCCGG : 76365 631 : {As} >>>> Target Intron 12 >>>> {p}TyrCysSerGlnMetLeuSerLy : 639 {||} 640 bp {|}||||||||||||||||||||||| {As}++ ++{p}TyrCysSerGlnMetLeuSerLy 76366 : {GA}gt..........................ag{C}TACTGCAGCCAAATGCTCAGTAA : 77032 640 : sGluValAspAlaCysValThrAspLeuLeuLysGluLeuValArgPheGlnAspArgMe : 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| sGluValAspAlaCysValThrAspLeuLeuLysGluLeuValArgPheGlnAspArgMe 77033 : AGAAGTTGACGCCTGTGTTACGGACCTGCTGAAAGAGCTGGTGCGTTTCCAAGATCGAAT : 77092 660 : tTyrGlnLysAspProValLysAlaLysThrLysArgArgLeuValLeuGlyLeuArgGl : 679 ||||||||||||||||||||||||||||.!!||||||||||||||||||||||||||||| tTyrGlnLysAspProValLysAlaLysAlaLysArgArgLeuValLeuGlyLeuArgGl 77093 : GTACCAGAAAGATCCAGTCAAGGCTAAGGCCAAACGCCGACTTGTGTTGGGGCTGAGGGA : 77152 680 : uValLeuLysHisLeuLysLeuLysLysLeuLysCysValIleIleSerProAsnCysGl : 699 ||||||||||||||||||||||!:!||||||||||||:!!|||||||||||||||||||| uValLeuLysHisLeuLysLeuArgLysLeuLysCysIleIleIleSerProAsnCysGl 77153 : AGTCCTCAAACATCTGAAGCTCAGAAAGTTGAAATGCATCATCATCTCTCCAAACTGTGA : 77212 700 : uLysIleGlnSerLys{G} >>>> Target Intron 13 >>>> {ly}GlyLeuA : 708 ||||||||||||||||{|} 6732 bp {||}||||||| uLysIleGlnSerLys{G}++ ++{ly}GlyLeuA 77213 : GAAGATACAGTCGAAA{G}gt..........................ag{GT}GGGCTAG : 83971 709 : spAspThrLeuHisThrIleIleAspTyrAlaCysGluGlnAsnIleProPheValPheA : 728 |||||||||||||||||||||||||||||||||||!!:|||||||||||||||||||||| spAspThrLeuHisThrIleIleAspTyrAlaCysAspGlnAsnIleProPheValPheA 83972 : ACGACACCCTGCACACCATCATTGACTACGCCTGTGACCAGAACATCCCCTTTGTGTTTG : 84031 729 : laLeuAsnArgLysAlaLeuGlyArgSerLeuAsnLysAlaValProValSerValValG : 748 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| laLeuAsnArgLysAlaLeuGlyArgSerLeuAsnLysAlaValProValSerValValG 84032 : CTCTCAACCGCAAAGCTCTGGGACGCAGCCTGAACAAGGCTGTTCCCGTCAGCGTGGTGG : 84091 749 : lyIlePheSerTyrAspGlyAlaGln >>>> Target Intron 14 >>>> AspG : 758 |||||||||||||||||||||||||| 319 bp |||| lyIlePheSerTyrAspGlyAlaGln++ ++AspG 84092 : GCATCTTCAGCTACGATGGGGCCCAGgt..........................agGACC : 84440 759 : lnPheHisLysMetValGluLeuThrValAlaAlaArgGlnAlaTyrLysThrMetLeuG : 778 ||||||||||||||||||||||||||:!!||||||||||||||||||!:!|||||||||| lnPheHisLysMetValGluLeuThrMetAlaAlaArgGlnAlaTyrArgThrMetLeuG 84441 : AGTTCCACAAGATGGTGGAGCTGACGATGGCGGCCCGGCAGGCCTATAGGACTATGCTGG : 84500 779 : luAsnValGlnGlnGluLeuValGlyGluProArgProGlnAlaProProSerLeuProT : 798 |||||..!!::||||||! !:!!||||||! ! !!||| |||||| !!|||! !|||! luAsnThrArgGlnGluProLeuGlyGluLeuGlyProCysAlaProAlaSerProProS 84501 : AGAACACGCGCCAGGAGCCGTTGGGTGAGCTTGGGCCCTGCGCCCCTGCCAGCCCGCCCA : 84560 799 : hrGlnGlyProSerCysProAlaGluAspGlyProProAlaLeuLysGluLysGluGluP : 818 :!||||||||||||||||||||||||||| !!|||! !!.!! ! ! !! !||||||| erGlnGlyProSerCysProAlaGluAspArgProLeuValProAlaGlyThrGluGluP 84561 : GTCAGGGCCCCAGCTGCCCTGCGGAGGACAGGCCCCTGGTCCCCGCTGGAACAGAGGAGC : 84620 819 : roHisTyr{I} >>>> Target Intron 15 >>>> {le}GluIleTrpLysLys : 826 ||!.!|||{|} 664 bp {||}:!!:!!|||!:!!!. roArgTyr{I}++ ++{le}GlnValTrpArgAsn 84621 : CACGCTAC{A}gt..........................ag{TT}CAAGTCTGGAGAAAC : 85308 827 : HisLeuGluAlaTyrSerGlyCysThrLeuGluLeuGluGluSerLeuGluAlaSerThr : 846 |||:!!|||||||||||| !!|||.!!||||||||||||||||||||||||||||||||| HisValGluAlaTyrSerArgCysAlaLeuGluLeuGluGluSerLeuGluAlaSerThr 85309 : CATGTGGAAGCGTACAGTCGGTGTGCCCTGGAGCTGGAGGAGTCGCTGGAGGCTTCAACT : 85368 847 : SerGlnMetMetAsnLeuAsnLeu : 854 |||||||||||||||||||||||| SerGlnMetMetAsnLeuAsnLeu 85369 : TCTCAGATGATGAACTTGAATTTG : 85394 vulgar: SPP00000037_1.0 11 854 . NIVO01049792.1:subseq(1550389,135394) 50011 85394 + 2907 M 38 114 G 0 3 M 11 33 S 0 2 5 0 2 I 0 4718 3 0 2 S 1 1 M 85 255 S 0 2 5 0 2 I 0 194 3 0 2 S 1 1 M 44 132 S 0 1 5 0 2 I 0 1194 3 0 2 S 1 2 M 40 120 G 0 3 M 35 105 5 0 2 I 0 3086 3 0 2 M 6 18 G 0 3 M 20 60 S 0 1 5 0 2 I 0 1543 3 0 2 S 1 2 M 57 171 G 1 0 M 11 33 5 0 2 I 0 2652 3 0 2 M 41 123 5 0 2 I 0 1302 3 0 2 M 30 90 5 0 2 I 0 1272 3 0 2 M 44 132 S 0 1 5 0 2 I 0 6844 3 0 2 S 1 2 M 55 165 5 0 2 I 0 700 3 0 2 M 10 30 G 0 3 M 19 57 G 0 6 M 14 42 S 0 2 5 0 2 I 0 935 3 0 2 S 1 1 M 52 156 S 0 2 5 0 2 I 0 636 3 0 2 S 1 1 M 73 219 S 0 1 5 0 2 I 0 6728 3 0 2 S 1 2 M 51 153 5 0 2 I 0 315 3 0 2 M 64 192 S 0 1 5 0 2 I 0 660 3 0 2 S 1 2 M 33 99 # --- START OF GFF DUMP --- # # ##gff-version 2 ##source-version exonerate:protein2genome:local 2.2.0 ##date 2017-11-21 ##type DNA # # # seqname source feature start end score strand frame attributes # NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local gene 50012 85394 2907 + . gene_id 1 ; sequence SPP00000037_1.0 ; gene_orientation + NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 50012 50163 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 50012 50163 . + . insertions 3 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 50164 50165 . + . intron_id 1 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 50164 54885 . + . intron_id 1 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 54884 54885 . + . intron_id 0 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 54886 55143 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 54886 55143 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 55144 55145 . + . intron_id 2 ; splice_site "AT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 55144 55341 . + . intron_id 2 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 55340 55341 . + . intron_id 1 ; splice_site "tg" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 55342 55475 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 55342 55475 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 55476 55477 . + . intron_id 3 ; splice_site "gt" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 55476 56673 . + . intron_id 3 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 56672 56673 . + . intron_id 2 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 56674 56903 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 56674 56903 . + . insertions 3 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 56904 56905 . + . intron_id 4 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 56904 59993 . + . intron_id 4 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 59992 59993 . + . intron_id 3 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 59994 60075 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 59994 60075 . + . insertions 3 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 60076 60077 . + . intron_id 5 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 60076 61622 . + . intron_id 5 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 61621 61622 . + . intron_id 4 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 61623 61828 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 61623 61828 . + . insertions 0 ; deletions 1 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 61829 61830 . + . intron_id 6 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 61829 64484 . + . intron_id 6 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 64483 64484 . + . intron_id 5 ; splice_site "ag" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 64485 64607 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 64485 64607 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 64608 64609 . + . intron_id 7 ; splice_site "gt" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 64608 65913 . + . intron_id 7 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 65912 65913 . + . intron_id 6 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 65914 66003 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 65914 66003 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 66004 66005 . + . intron_id 8 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 66004 67279 . + . intron_id 8 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 67278 67279 . + . intron_id 7 ; splice_site "ag" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 67280 67412 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 67280 67412 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 67413 67414 . + . intron_id 9 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 67413 74260 . + . intron_id 9 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 74259 74260 . + . intron_id 8 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 74261 74427 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 74261 74427 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 74428 74429 . + . intron_id 10 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 74428 75131 . + . intron_id 10 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 75130 75131 . + . intron_id 9 ; splice_site "ag" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 75132 75271 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 75132 75271 . + . insertions 9 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 75272 75273 . + . intron_id 11 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 75272 76210 . + . intron_id 11 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 76209 76210 . + . intron_id 10 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 76211 76369 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 76211 76369 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 76370 76371 . + . intron_id 12 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 76370 77009 . + . intron_id 12 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 77008 77009 . + . intron_id 11 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 77010 77230 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 77010 77230 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 77231 77232 . + . intron_id 13 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 77231 83962 . + . intron_id 13 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 83961 83962 . + . intron_id 12 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 83963 84117 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 83963 84117 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 84118 84119 . + . intron_id 14 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 84118 84436 . + . intron_id 14 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 84435 84436 . + . intron_id 13 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 84437 84629 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 84437 84629 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice5 84630 84631 . + . intron_id 15 ; splice_site "GT" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local intron 84630 85293 . + . intron_id 15 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local splice3 85292 85293 . + . intron_id 14 ; splice_site "AG" NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local cds 85294 85394 . + . NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local exon 85294 85394 . + . insertions 0 ; deletions 0 NIVO01049792.1:subseq(1550389,135394) exonerate:protein2genome:local similarity 50012 85394 2907 + . alignment_id 1 ; Query SPP00000037_1.0 ; Align 50012 12 114 ; Align 50129 50 33 ; Align 54887 62 255 ; Align 55343 148 132 ; Align 56676 193 120 ; Align 56799 233 105 ; Align 59994 268 18 ; Align 60015 274 60 ; Align 61625 295 171 ; Align 61796 353 33 ; Align 64485 364 123 ; Align 65914 405 90 ; Align 67280 435 132 ; Align 74263 480 165 ; Align 75132 535 30 ; Align 75165 545 57 ; Align 75228 564 42 ; Align 76212 579 156 ; Align 77011 632 219 ; Align 83965 706 153 ; Align 84437 757 192 ; Align 85296 822 99 # --- END OF GFF DUMP --- # -- completed exonerate analysis