genewise output
Score 268.65 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000012_1.0   48 AKHHVNGNRTVEPFPEGTQMAVF                           
                     AKHHVNGNRTVEPFPEGTQMA+F                           
                     AKHHVNGNRTVEPFPEGTQMALF          G:G[gga]         
NIVO01055729.1:50000 gaccgagaaaggctcggacagctGGTAAGAT  Intron 1   TAGGA 
                     caaatagagctactcagcatctt <1-----[50070:73642]-1>   
                     cattctccaatatcagaaggtat                           


SPP00000012_1.0   72 MGCFWGAERKFWVLKGVYSTQVGFAGGYTSNPTYKEVCS           
                     MGCFWGAERKFW LKGVYSTQVG+AGGYT NPTYKEVCS           
                     MGCFWGAERKFWTLKGVYSTQVGYAGGYTPNPTYKEVCS           
NIVO01055729.1:73645 agtttgggaattacaggttacggtgggtacacataggtt           
                     tggtggcagatgctagtaccatgacggaccaccaaatgc           
                     gctcgatagacgcgatatatatttaacttcttttaacca           


SPP00000012_1.0  111                           KTGHAEVVRVVYQPEHMSFEELL 
                                               KTGHAEVVRVVYQPE +SFEELL 
                               E:G[gga]        KTGHAEVVRVVYQPERISFEELL 
NIVO01055729.1:73762 GGTAGGAA  Intron 2   AAGGAaagcggggcggtccgcaatggcc 
                      <1-----[73763:128684-1>  acgacattgttaacagtgtaatt 
                                               atccaaacgggcgaaccctgagc 


SPP00000012_1.0  135 KVFWENHDPTQ                          MRQGNDHGTQYR 
                     KVFWENHDPTQ                          MRQGNDHG+QYR 
                     KVFWENHDPTQ          G:G[ggc]        MRQGNDHGSQYR 
NIVO01055729.1128756 agttgacgcacGGTAGATG  Intron 3   CAGGCaccgagcgtctc 
                     attgaaaacca <1-----[128790:15791-1>  tgagaaagcaag 
                     gccggttcgca                          gcaccccctgcc 


SPP00000012_1.0  159 SAIYPTSAKQMEAALSSKENYQKV                          
                     SAIYPTSA+ M AAL S+E+YQKV                          
                     SAIYPTSAEHMGAALRSQEDYQKV                          
NIVO01055729.1157956 tgatcatggcagggcatcggtcag                          
                     cctaccccaatgcctgcaaaaaat                          
                     ccccgcttgcggacggcggccgga                          


//
Making a G in phase 1 intron
Making a G in phase 1 intron
Making a G in phase 1 intron
>NIVO01055729.1:subseq(13555,320826).pep
AKHHVNGNRTVEPFPEGTQMALFGMGCFWGAERKFWTLKGVYSTQVGYAGGYTPNPTYKE
VCSGKTGHAEVVRVVYQPERISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAE
HMGAALRSQEDYQKV
//
>NIVO01055729.1:subseq(13555,320826).[50000:158027].sp
GCCAAACATCATGTCAATGGCAACAGAACAGTTGAACCTTTCCCAGAGGGAACACAGATG
GCTCTATTTGGAATGGGCTGTTTCTGGGGAGCTGAAAGGAAATTCTGGACCCTGAAAGGT
GTATATTCAACTCAAGTTGGTTATGCAGGAGGCTATACTCCCAATCCTACTTATAAAGAA
GTCTGCTCAGGAAAAACTGGCCACGCAGAAGTAGTCCGGGTGGTGTACCAGCCAGAACGC
ATCAGCTTTGAGGAACTGCTCAAGGTCTTCTGGGAGAATCATGACCCGACCCAAGGCATG
CGCCAAGGCAACGACCACGGCTCTCAGTACCGCTCCGCCATCTACCCGACCTCTGCTGAG
CACATGGGGGCAGCCCTGAGGTCCCAGGAGGACTACCAGAAGGTA
//
NIVO01055729.1:subseq(13555,320826)	GeneWise	match	50000	158027	268.65	+	.	NIVO01055729.1:subseq(13555,320826)-genewise-prediction-1
NIVO01055729.1:subseq(13555,320826)	GeneWise	cds	50000	50069	0.00	+	0	NIVO01055729.1:subseq(13555,320826)-genewise-prediction-1
NIVO01055729.1:subseq(13555,320826)	GeneWise	intron	50070	73642	0.00	+	.	NIVO01055729.1:subseq(13555,320826)-genewise-prediction-1
NIVO01055729.1:subseq(13555,320826)	GeneWise	cds	73643	73762	0.00	+	2	NIVO01055729.1:subseq(13555,320826)-genewise-prediction-1
NIVO01055729.1:subseq(13555,320826)	GeneWise	intron	73763	128684	0.00	+	.	NIVO01055729.1:subseq(13555,320826)-genewise-prediction-1
NIVO01055729.1:subseq(13555,320826)	GeneWise	cds	128685	128789	0.00	+	2	NIVO01055729.1:subseq(13555,320826)-genewise-prediction-1
NIVO01055729.1:subseq(13555,320826)	GeneWise	intron	128790	157917	0.00	+	.	NIVO01055729.1:subseq(13555,320826)-genewise-prediction-1
NIVO01055729.1:subseq(13555,320826)	GeneWise	cds	157918	158027	0.00	+	2	NIVO01055729.1:subseq(13555,320826)-genewise-prediction-1
//

genewise output
Score 102.59 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SPP00000012_1.0  183 LSEHGFGPITTDIREGQTFYYAEDYHQQYLSKNPNGYCGLGGTGVSCP  
                     LSEHGFG ITTDIREGQT +Y EDYH+QYL KNP+G+C LGGTGVSCP  
                     LSEHGFGLITTDIREGQTSHYMEDYHEQYLGKNPDGFCDLGGTGVSCP  
NIVO01055729.-270826 ttgcgtgcaaagacggcatctaggtcgctcgaacggttgcggaggttc  
                     tcaagtgttccatgagaccaataaaaaaatgaacagtgatggcgtcgc  
                     gggttccgccgccggagctccggtccggcacgcctgctccgccagctc  


//
>NIVO01055729.1:subseq(13555,320826).pep
LSEHGFGLITTDIREGQTSHYMEDYHEQYLGKNPDGFCDLGGTGVSCP
//
>NIVO01055729.1:subseq(13555,320826).[270826:270681].sp
TTGTCGGAGCATGGTTTCGGCCTGATCACCACGGACATCCGGGAGGGACAGACCTCTCAC
TACATGGAGGATTACCACGAGCAGTACCTAGGCAAGAACCCCGATGGGTTCTGTGACCTC
GGGGGCACCGGAGTGTCCTGTCCC
//
NIVO01055729.1:subseq(13555,320826)	GeneWise	match	270826	270683	102.59	-	.	NIVO01055729.1:subseq(13555,320826)-genewise-prediction-1
NIVO01055729.1:subseq(13555,320826)	GeneWise	cds	270826	270683	0.00	-	0	NIVO01055729.1:subseq(13555,320826)-genewise-prediction-1
//