genewise output Score 399.89 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000270_2.0 1 MSPRRTLPRPFLLCLCLSLCLAAAAARGAVQS MSPRRTLPRPFLLCLCLSL LAAAAARGAVQS MSPRRTLPRPFLLCLCLSLSLAAAAARGAVQS NIVO01040223.1:50000 aacccaccccttctctcacacgggggcgggct tgcggctcgctttgtgtgtgtcccccggctac gcgggccgcccgccccccccgcgcgccaaggc SPP00000270_2.0 33 SCRDKKNCKVVFSQQELRKRLTP SCRDKKNCKVVFSQ+ELRKRLTP G:G[ggg] SCRDKKNCKVVFSQEELRKRLTP NIVO01040223.1:50096 GGTGAGTT Intron 1 CAGGGttagaaataggttcggcaaccac <1-----[50097:107527-1> cggaaaagatttcaaatgagtcc atgtagctggctcggaggggaac SPP00000270_2.0 57 LQYHVTQEKGTE AFEGEYTHHKD LQYHVTQEKGTE AFEGEYTHHKD LQYHVTQEKGTE S:S[agt] AFEGEYTHHKD NIVO01040223.1107599 cctcgacgagagAGGTAAGGC Intron 2 CAGTgtgggtaccag taaatcaaagca <2-----[107637:10925-2> ctagaacaaaa gactctggagca ccaaatatcat SPP00000270_2.0 81 PGIYKCVVCGTPLF SETKFDSGS PGIYKCVVCGTPLF SETKFDSGS PGIYKCVVCGTPLF K:K[aag] SETKFDSGS NIVO01040223.1109285 cgatatggtgacttAAGTAAGTA Intron 3 CAGGtgaatgtgt cgtaagttggcctt <2-----[109329:15403-2> cacatacgc taacattttatagt aacatccta SPP00000270_2.0 105 WPSFHDVINSDAITFTDDFSYGM WPSFHDVINSDA+TFTDDFSYGM G:G[ggc] WPSFHDVINSDAVTFTDDFSYGM NIVO01040223.1154059 GGTATGTT Intron 4 CAGGCtcttcggaatgggataggtttga <1-----[154060:21922-1> gcctaattacactctcaatcagt gtacccgctttggacatctctgg SPP00000270_2.0 129 HRVETSCSQ CGAHLGHIFDDGPRPTG HRVETSCSQ CGAHLGHIFDDGPRPTG HRVETSCSQ CGAHLGHIFDDGPRPTG NIVO01040223.1219293 caggaattcGTCAGTG Intron 5 CAGtggccgcatgggcccag agtacggca<0-----[219320:22913-0>ggcatgattaagcgccg cgggccctg cttccgctcccattacc SPP00000270_2.0 155 KRYCINSASLSFSPAESSGAQGDSAGGSPAPGDKTEL KRYCINSASLSF+ AESSG QGDSAGGSPAPGDKTEL KRYCINSASLSFTAAESSGPQGDSAGGSPAPGDKTEL NIVO01040223.1229182 aattaatgttttagggaagccggagggacgcggaagc agagtaccctctcccagggcagagcgggcccgaacat aaccacgacgtcctagctccggctggccgcttcgggg // Making a G in phase 1 intron Making a S in phase 2 intron Making a K in phase 2 intron Making a G in phase 1 intron >NIVO01040223.1:subseq(1447076,279199).pep MSPRRTLPRPFLLCLCLSLSLAAAAARGAVQSGSCRDKKNCKVVFSQEELRKRLTPLQYH VTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSDAVTF TDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYCINSASLSFTAAESSGPQGDSAG GSPAPGDKTEL // >NIVO01040223.1:subseq(1447076,279199).[50000:229292].sp ATGAGCCCGCGGCGGACCCTCCCGCGCCCCTTCTTGCTCTGCCTCTGCCTCAGCCTCAGC CTGGCCGCGGCCGCGGCCCGCGGAGCAGTGCAGTCCGGGTCATGTAGGGATAAAAAGAAC TGTAAGGTGGTCTTTTCCCAGGAGGAACTGAGGAAGCGGCTAACACCCCTGCAATACCAT GTCACTCAGGAGAAAGGGACCGAAAGTGCCTTCGAAGGAGAATATACACATCACAAAGAT CCTGGAATATACAAATGTGTTGTTTGTGGAACTCCATTGTTTAAGTCAGAAACCAAATTT GACTCCGGTTCAGGCTGGCCTTCATTCCACGACGTGATCAATTCTGATGCGGTGACATTC ACAGATGACTTTTCCTATGGGATGCACAGGGTGGAGACCAGCTGCTCTCAGTGCGGTGCT CACCTCGGGCACATTTTCGACGACGGACCTCGTCCAACCGGCAAAAGATACTGCATAAAC TCGGCATCCTTGTCTTTCACCGCTGCAGAGAGCAGTGGCCCCCAGGGGGACAGTGCGGGG GGCAGCCCGGCCCCTGGTGACAAGACGGAGCTG // NIVO01040223.1:subseq(1447076,279199) GeneWise match 50000 229292 399.89 + . NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise cds 50000 50096 0.00 + 0 NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise intron 50097 107527 0.00 + . NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise cds 107528 107636 0.00 + 2 NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise intron 107637 109250 0.00 + . NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise cds 109251 109328 0.00 + 1 NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise intron 109329 154030 0.00 + . NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise cds 154031 154059 0.00 + 1 NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise intron 154060 219221 0.00 + . NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise cds 219222 219319 0.00 + 2 NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise intron 219320 229130 0.00 + . NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise cds 229131 229292 0.00 + 0 NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 // genewise output Score 23.24 bits over entire alignment Scores as bits over a synchronous coding model Warning: The bits scores is not probablistically correct for single seqs See WWW help for more info SPP00000270_2.0 131 VETSCSQCGAHLGHIF VE+SCS HLG IF VESSCSHSSKHLGEIF NIVO01040223.-181204 ggatttcttactggat tagcgcaccaatgatt gacatctccgtgagtt // >NIVO01040223.1:subseq(1447076,279199).pep VESSCSHSSKHLGEIF // >NIVO01040223.1:subseq(1447076,279199).[181204:181155].sp GTGGAAAGCTCATGTTCCCATTCCTCCAAGCATTTGGGAGAGATTTTT // NIVO01040223.1:subseq(1447076,279199) GeneWise match 181204 181157 23.24 - . NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 NIVO01040223.1:subseq(1447076,279199) GeneWise cds 181204 181157 0.00 - 0 NIVO01040223.1:subseq(1447076,279199)-genewise-prediction-1 //